Name: [Hs02131836_cn] [B3GNT5]
Creator: Thermo Fisher Scientific
Keywords: [B3GNT5] Assay, [UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	84002
Gene Name:	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
Gene Aliases:	B3GN-T5, beta3Gn-T5
Location:	Chr.3:183253207-183273391 on Build GRCh38
Assay Gene Location:	Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
B3GNT5	NM_032047.4	2	3858	NP_114436.1
	XM_005247823.4	2	4063	XP_005247880.1
	XM_005247824.3	3	4117	XP_005247881.1
	XM_005247825.3	3	4001	XP_005247882.1
	XM_011513225.2	2	4497	XP_011511527.1
	XM_011513226.2	3	3974	XP_011511528.1
	XM_011513227.2	3	4008	XP_011511529.1
	XM_011513228.2	2	3909	XP_011511530.1
	XM_011513229.2	2	3763	XP_011511531.1
	XM_017007309.1	3	5131	XP_016862798.1
	AB045278.1	1	3457	BAB40940.1
	AB209517.1	2	3676	BAD92754.1
	AK074235.1	1	2814
	BF001695.1	1	274
	BU684277.1	1	283

Target Gene Details

Entrez Gene ID:	23101
Gene Name:	MCF.2 cell line derived transforming sequence-like 2
Gene Aliases:	ARHGEF22
Location:	Chr.3:183176116-183428990 on Build GRCh38
Assay Gene Location:	Within Exon 16

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
MCF2L2	NM_015078.3			NP_055893.3
	XM_011512585.2			XP_011510887.1
	XM_011512586.2			XP_011510888.1
	XM_017005943.1			XP_016861432.1
	XM_017005944.1	16	5674	XP_016861433.1
	XM_017005945.1			XP_016861434.1
	XM_017005946.1			XP_016861435.1
	AB020668.1			BAA74884.1
	AK124500.1			BAC85866.1
	AK301698.1
	AY172737.1			AAO19651.1
	BC064632.1			AAH64632.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3893833	Chr.3:183130677 - 183342208 on Build GRCh38	Gain	B3GNT5 MCF2L2 LAMP3
nsv1006872	Chr.3:183194738 - 183548501 on Build GRCh38	Loss	LINC00888 KLHL6 B3GNT5 MCF2L2