Hs02134493_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137252460 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1
	AK097764.1

Target Gene Details

• Entrez Gene ID: 441476
• Gene Name: sperm-tail PG-rich repeat containing 3
• Gene Aliases: C9orf173
• Location: Chr.9:137250840-137253483 on Build GRCh38
• Assay Gene Location: Overlaps Intron 4 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STPG3	NM_001004353.3			NP_001004353.2
	NM_001256699.1			NP_001243628.1
	NM_001256700.1			NP_001243629.1
	NM_001256701.1			NP_001243630.1
	NR_046339.1
	NR_046340.1
	XM_006717113.2			XP_006717176.1
	XM_006717115.2			XP_006717178.1
	AK097565.1			BAC05104.1
	BC033939.1			AAH33939.2
	BC132726.1
	BC144308.2
	BC144311.1
	BC144314.1
	DB453255.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	SSNA1 NRARP CYSRT1 ANAPC2 RNF224 TOR4A NDOR1 TPRN NELFB EXD3 SLC34A3 FAM166A RNF208 C9orf173-AS1 TMEM203 STPG3 TUBB4B
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	NRARP CYSRT1 NELFB EXD3 SLC34A3 FAM166A RNF224 TOR4A C9orf173-AS1 STPG3 TUBB4B
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	UAP1L1 C9orf172 ANAPC2 ENTPD8 LCN12 ENTPD2 CLIC3 LRRC26 RNF224 TOR4A CCDC183 FUT7 MIR3621 MAMDC4 NOXA1 PTGDS SAPCD2 LCNL1 MIR7114 NSMF EDF1 CYSRT1 FBXW5 MAN1B1-AS1 CCDC183-AS1 TPRN FAM166A MIR4292 C9orf173-AS1 TMEM203 STPG3 NRARP RABL6 ABCA2 MIR4479 TRAF2 NDOR1 EXD3 SLC34A3 GRIN1 PRR31 RNF208 PNPLA7 C9orf142 NPDC1 SSNA1 PHPT1 C8G C9orf139 TMEM210 MAN1B1 NELFB LOC101930307 DPP7 TUBB4B
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	SSNA1 NRARP CYSRT1 ANAPC2 LRRC26 RNF224 TOR4A TMEM210 NDOR1 MIR3621 TPRN NELFB EXD3 SLC34A3 GRIN1 FAM166A RNF208 C9orf173-AS1 TMEM203 STPG3 TUBB4B
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	SSNA1 NRARP CYSRT1 ANAPC2 ENTPD8 LRRC26 RNF224 TOR4A TMEM210 NDOR1 MIR3621 TPRN NELFB NOXA1 EXD3 SLC34A3 GRIN1 FAM166A RNF208 C9orf173-AS1 TMEM203 STPG3 TUBB4B
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	UAP1L1 C9orf172 ANAPC2 LCN10 LCN12 ENTPD2 SNHG7 CLIC3 AGPAT2 LRRC26 RNF224 LCN15 TOR4A CCDC183 FUT7 MIR3621 MAMDC4 PTGDS SAPCD2 LCNL1 LCN6 LCN8 EDF1 SNORA17A CYSRT1 LOC100128593 FBXW5 MAN1B1-AS1 CCDC183-AS1 MIR6722 TPRN FAM166A HSPC324 MIR4292 C9orf173-AS1 TMEM203 STPG3 NRARP RABL6 MIR126 ABCA2 EGFL7 MIR4479 TRAF2 NDOR1 EXD3 TMEM141 SLC34A3 GRIN1 PRR31 RNF208 C9orf142 NPDC1 SSNA1 PHPT1 C8G LINC01451 SNORA17B C9orf139 TMEM210 MAN1B1 NELFB LOC101930307 DPP7 FAM69B TUBB4B

More Information

Additional Information:

For this assay, SNP(s) [rs144037445] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

structural protein