Hs02148498_cn

• Gene Symbol: C9orf173-AS1
• Assay Reference Genome Location: Chr.9:137253159 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 100129722
• Gene Name: C9orf173 antisense RNA 1
• Gene Aliases: -
• Location: Chr.9:137250219-137253497 on Build GRCh38
• Assay Gene Location: Overlaps Intron 1 - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf173-AS1	NR_038389.1
	AK097764.1

Target Gene Details

• Entrez Gene ID: 441476
• Gene Name: sperm-tail PG-rich repeat containing 3
• Gene Aliases: C9orf173
• Location: Chr.9:137250840-137253483 on Build GRCh38
• Assay Gene Location: Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STPG3	NM_001004353.3	6	867	NP_001004353.2
	NM_001256699.1	6	883	NP_001243628.1
	NM_001256700.1	6	718	NP_001243629.1
	NM_001256701.1	6	702	NP_001243630.1
	NR_046339.1	5	732
	NR_046340.1	6	626
	XM_006717113.2	7	1029	XP_006717176.1
	XM_006717115.2	6	709	XP_006717178.1
	AK097565.1	6	875	BAC05104.1
	BC033939.1	6	698	AAH33939.2
	BC132726.1	6	883
	BC144308.2	6	867
	BC144311.1	6	702
	BC144314.1	6	883

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	NELFB FAM166A STPG3 EXD3 RNF224 NDOR1 SLC34A3 C9orf173-AS1 TPRN SSNA1 TOR4A NRARP TUBB4B RNF208 CYSRT1 TMEM203 ANAPC2
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	NELFB FAM166A TOR4A STPG3 NRARP EXD3 TUBB4B RNF224 SLC34A3 CYSRT1 C9orf173-AS1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	C9orf139 FUT7 TMEM210 CCDC183-AS1 EXD3 NDOR1 GRIN1 MAN1B1 C9orf173-AS1 ABCA2 TPRN PRR31 TRAF2 ENTPD8 CLIC3 ANAPC2 FAM166A STPG3 CCDC183 RNF224 MIR3621 MAMDC4 PTGDS UAP1L1 ENTPD2 MIR4479 TOR4A EDF1 C8G MIR7114 NRARP CYSRT1 NELFB MAN1B1-AS1 LRRC26 PNPLA7 C9orf172 NSMF SSNA1 DPP7 NPDC1 FBXW5 TUBB4B PHPT1 RNF208 C9orf142 MIR4292 LCN12 LOC101930307 SLC34A3 SAPCD2 NOXA1 LCNL1 TMEM203 RABL6
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	NELFB FAM166A STPG3 LRRC26 TMEM210 EXD3 RNF224 NDOR1 MIR3621 SLC34A3 GRIN1 C9orf173-AS1 TPRN SSNA1 TOR4A NRARP TUBB4B RNF208 CYSRT1 TMEM203 ANAPC2
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	NELFB FAM166A STPG3 LRRC26 TMEM210 EXD3 RNF224 NDOR1 MIR3621 SLC34A3 GRIN1 C9orf173-AS1 TPRN SSNA1 NOXA1 TOR4A NRARP TUBB4B RNF208 ENTPD8 CYSRT1 TMEM203 ANAPC2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	FAM69B LCN10 C9orf139 FUT7 TMEM210 CCDC183-AS1 EXD3 NDOR1 GRIN1 MAN1B1 C9orf173-AS1 ABCA2 TPRN MIR6722 EGFL7 PRR31 HSPC324 TRAF2 LOC100128593 CLIC3 ANAPC2 FAM166A STPG3 CCDC183 RNF224 MIR3621 MAMDC4 PTGDS LCN8 UAP1L1 ENTPD2 MIR4479 LCN15 TOR4A EDF1 C8G NRARP CYSRT1 NELFB MAN1B1-AS1 SNHG7 MIR126 LRRC26 C9orf172 TMEM141 SSNA1 DPP7 NPDC1 FBXW5 TUBB4B SNORA17A PHPT1 RNF208 C9orf142 LINC01451 LCN6 MIR4292 LCN12 LOC101930307 SLC34A3 SAPCD2 LCNL1 SNORA17B AGPAT2 TMEM203 RABL6

More Information

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

structural protein