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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:765748 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02158553_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 12 - Intron 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain GNG13 RPUSD1 PRR25 CHTF18 MSLN MIR662
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MRPS34 MIR6767 MEIOB SNORD60 MIR6511B1 GFER SNHG19 CCDC78 HAGH FAM173A IFT140 MIR3176 TPSG1 RGS11 ABCA17P AXIN1 FAM234A TPSAB1 LOC729652 RPUSD1 MLST8 NME3 NTHL1 LINC00235 NTN3 RPL23AP5 RNPS1 DDX11L10 RHBDL1 LOC101929280 TMEM8A LOC106660606 NPW SNHG9 RPL3L ERVK13-1 CEMP1 RHBDF1 CASKIN1 SNORA64 TMEM204 DECR2 LOC652276 ECI1 PKD1 MIR3178 SNRNP25 MIR5587 KCTD5 RAB40C NARFL LOC105371184 LINC00254 UNKL PDPK1 HBM MIR3177 STUB1 PIGQ CCNF PGP FLJ42627 HBA1 CLCN7 LOC100134368 LUC7L HAGHL GNPTG PTX4 TPSD1 TBL3 LOC107984876 BRICD5 SPSB3 ZNF598 RNF151 HBQ1 CRAMP1 LOC105371046 MIR662 SNORA78 FBXL16 NDUFB10 LMF1-AS1 HBA2 WDR90 WFIKKN1 TBC1D24 RAB11FIP3 LOC100287175 MIR1225 PRR35 EME2 ARHGDIG ABCA3 MIR6859-4 NOXO1 PRR25 HN1L FAHD1 CHTF18 MSLN MPG MIR940 SSTR5 LOC107987233 IGFALS LOC105371038 MIR4717 SSTR5-AS1 MIR4516 SOX8 MIR3180-5 WASIR2 MSRB1 UBE2I MCRIP2 METRN MAPK8IP3 PRSS27 JMJD8 MIR6768 NME4 LOC105371045 CAPN15 MRPL28 LMF1 NPRL3 ATP6V0C C1QTNF8 RAB26 BAIAP3 TRAF7 TSR3 RPS2 HS3ST6 MIR3677 CCDC154 PDIA2 RHOT2 SLC9A3R2 C16orf59 GNG13 SNORA10 SYNGR3 AMDHD2 DNASE1L2 NHLRC4 POLR3K TELO2 PRSS29P NUBP2 E4F1 LOC105371049 LOC105371047 TSC2 TPSB2 C16orf91 CACNA1H WDR24 HBZ METTL26
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MSLN MIR662
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss CAPN15 MIR662 FBXL16 WDR90 CCDC78 WFIKKN1 FAM173A MIR5587 MIR3176 RAB40C NARFL LOC105371184 RAB11FIP3 LOC100287175 RHOT2 PRR35 GNG13 RPUSD1 PRR25 CHTF18 MSLN NHLRC4 STUB1 PIGQ LINC00235 LOC107987233 LOC105371038 RHBDL1 HAGHL LOC101929280 MCRIP2 METRN WDR24 METTL26 JMJD8
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss CAPN15 MIR662 FBXL16 WDR90 CCDC78 WFIKKN1 FAM173A MIR5587 MIR3176 RAB40C NARFL LOC105371184 RAB11FIP3 LOC100287175 RHOT2 PRR35 GNG13 RPUSD1 PRR25 CHTF18 MSLN NHLRC4 STUB1 PIGQ LINC00235 LOC107987233 LOC105371038 RHBDL1 HAGHL LOC101929280 MCRIP2 METRN WDR24 METTL26 JMJD8
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MSLN MIR662
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC107984876 CAPN15 MIR662 FBXL16 LMF1 LMF1-AS1 WDR90 C1QTNF8 CCDC78 WFIKKN1 FAM173A MIR5587 MIR3176 RAB40C NARFL LOC105371184 RAB11FIP3 LOC100287175 RHOT2 PRR35 GNG13 RPUSD1 PRR25 CHTF18 MSLN NHLRC4 STUB1 PIGQ LINC00235 SSTR5 LOC107987233 LOC105371038 SSTR5-AS1 RHBDL1 SOX8 HAGHL LOC101929280 MCRIP2 METRN WDR24 METTL26 JMJD8
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication MIR662 FBXL16 WDR90 CCDC78 WFIKKN1 FAM173A RAB40C NARFL LOC105371184 LOC100287175 RHOT2 GNG13 RPUSD1 CHTF18 MSLN STUB1 PIGQ LOC105371038 RHBDL1 HAGHL LOC101929280 MCRIP2 METRN WDR24 METTL26 JMJD8
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication CAPN15 MIR662 FBXL16 WDR90 CCDC78 WFIKKN1 FAM173A MIR5587 MIR3176 RAB40C NARFL LOC105371184 RAB11FIP3 LOC100287175 RHOT2 PRR35 GNG13 RPUSD1 PRR25 CHTF18 MSLN NHLRC4 STUB1 PIGQ LINC00235 LOC107987233 LOC105371038 RHBDL1 HAGHL LOC101929280 MCRIP2 METRN WDR24 METTL26 JMJD8
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss RHOT2 GNG13 RPUSD1 CHTF18 MSLN STUB1 MIR662 FBXL16 WDR90 LOC105371038 CCDC78 RHBDL1 FAM173A HAGHL MCRIP2 METRN NARFL LOC105371184 LOC100287175 WDR24 JMJD8
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss GNG13 RPUSD1 PRR25 CHTF18 MSLN MIR662
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MSLN MIR662

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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