Hs02167196_cn

• Gene Symbol: SPATC1L
• Assay Reference Genome Location: Chr.21:46168633 on build GRCh38
• Cytoband: 21q22.3

Target Gene Details

• Entrez Gene ID: 84221
• Gene Name: spermatogenesis and centriole associated 1-like
• Gene Aliases: C21orf56
• Location: Chr.21:46161148-46185159 on Build GRCh38
• Assay Gene Location: Overlaps Intron 2 - Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SPATC1L	NM_001142854.1			NP_001136326.1
	NM_032261.4			NP_115637.3
	XM_005261188.4			XP_005261245.1
	XM_017028480.1			XP_016883969.1
	AK304535.1
	AK309847.1
	AL136871.1			CAB66805.1
	BC009497.2
	BC065570.1
	BC084577.1			AAH84577.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv519904	Chr.21:46163592 - 46461396 on Build GRCh38	Loss	C21orf58 LSS YBEY DIP2A MCM3AP-AS1 SPATC1L PCNT MCM3AP
nsv1061087	Chr.21:46056174 - 46223305 on Build GRCh38	Loss	LSS SPATC1L COL6A2 FTCD
nsv509804	Chr.21:45879599 - 46235140 on Build GRCh38	Insertion	LSS LOC101928796 MCM3AP-AS1 SPATC1L MCM3AP COL6A2 PCBP3 FTCD COL6A1
nsv3545	Chr.21:46168351 - 46180400 on Build GRCh38	Insertion	SPATC1L
nsv587954	Chr.21:46162188 - 46183551 on Build GRCh38	Loss	SPATC1L
nsv470910	Chr.21:45933861 - 46665076 on Build GRCh38	Gain	C21orf58 DIP2A LOC101928796 SPATC1L PCNT COL6A2 FTCD COL6A1 DIP2A-IT1 S100B LSS YBEY MCM3AP-AS1 MCM3AP PRMT2 PCBP3
nsv1060978	Chr.21:46068159 - 46413726 on Build GRCh38	Gain	C21orf58 LSS YBEY MCM3AP-AS1 SPATC1L PCNT MCM3AP COL6A2 FTCD
nsv470911	Chr.21:46115334 - 46171856 on Build GRCh38	Loss	SPATC1L COL6A2 FTCD

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function
protein binding