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See other CHRNE CNV Assays ›
Gene Symbol
CHRNE
Assay Reference Genome
Location

Chr.17:4898052 on build GRCh38
Cytoband
17p13.2
Assay ID Hs02171671_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 1145

Gene Name:

 cholinergic receptor nicotinic epsilon subunit

Gene Aliases:

 ACHRE, CMS1D, CMS1E, CMS2A, CMS4A, CMS4B, CMS4C, FCCMS, SCCMS

Location:

 Chr.17:4897769-4905019 on Build GRCh38

Assay Gene Location:

 Within Exon 13
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CHRNE NM_000080.3 12 2177 NP_000071.1
XM_017024115.1 XP_016879604.1
AI041890.1 1 284
X66403.1 12 2177 CAA47030.1

Target Gene Details

Entrez Gene ID:

 50488

Gene Name:

 misshapen like kinase 1

Gene Aliases:

 B55, MAP4K6, MINK, YSK2, ZC3

Location:

 Chr.17:4833340-4898061 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 35
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MINK1 NM_001024937.3 NP_001020108.1
NM_001321236.1 NP_001308165.1
NM_015716.4 NP_056531.1
NM_153827.4 NP_722549.2
NM_170663.4 NP_733763.1
XM_006721531.2 XP_006721594.1
XM_006721532.2 XP_006721595.1
XM_006721536.2 XP_006721599.1
XM_011523906.1 XP_011522208.1
XM_017024704.1 XP_016880193.1
XM_017024705.1 XP_016880194.1
XM_017024706.1 XP_016880195.1
XM_017024707.1 XP_016880196.1
XM_017024708.1 XP_016880197.1
AB041926.1 BAA94838.1
AB209450.1 BAD92687.1
AF218033.1 AAG17275.1
AK096610.1
AL157418.1
BC034673.1 AAH34673.1
BM674875.1
BQ006038.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833350 Chr.17:4884713 - 5060776 on Build GRCh38 Loss INCA1 MINK1 GP1BA CHRNE LOC102724009 CAMTA2 PFN1 C17orf107 RNF167 KIF1C MIR6864 SLC52A1 LOC101927979 ENO3 SPAG7 MIR6865 SLC25A11
esv3572365 Chr.17:4874864 - 4942141 on Build GRCh38 Gain RNF167 MINK1 GP1BA CHRNE C17orf107 SLC25A11
nsv833349 Chr.17:4853631 - 4991300 on Build GRCh38 Loss INCA1 MINK1 GP1BA CHRNE CAMTA2 PFN1 C17orf107 RNF167 MIR6864 LOC101927979 ENO3 SPAG7 MIR6865 SLC25A11
nsv574275 Chr.17:4875192 - 4946479 on Build GRCh38 Gain RNF167 MINK1 GP1BA CHRNE PFN1 C17orf107 SLC25A11
nsv833347 Chr.17:4785297 - 4955981 on Build GRCh38 Loss PSMB6 MINK1 LOC107984973 GP1BA CHRNE PFN1 C17orf107 RNF167 GLTPD2 PLD2 VMO1 ENO3 SLC25A11
dgv3088n100 Chr.17:4868317 - 4942562 on Build GRCh38 Gain RNF167 MINK1 GP1BA CHRNE C17orf107 SLC25A11
nsv509647 Chr.17:4865132 - 4918672 on Build GRCh38 Insertion MINK1 CHRNE C17orf107
nsv574273 Chr.17:4585589 - 5460332 on Build GRCh38 Gain PSMB6 MINK1 LOC101928000 LOC102724009 LOC101559451 CXCL16 PFN1 C17orf107 ZNF232 LOC100130950 GLTPD2 VMO1 ALOX15 SLC52A1 RABEP1 LOC101927979 DHX33 ZMYND15 SMTNL2 MIR6865 ZNF594 INCA1 LOC107984973 MED11 TM4SF5 GP1BA SCIMP CHRNE C1QBP ARRB2 RPAIN CAMTA2 NUP88 USP6 RNF167 PLD2 KIF1C LOC400568 ZFP3 MIR6864 PELP1 ENO3 SPAG7 SLC25A11

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