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See other ABCF1 CNV Assays ›
Gene Symbol
ABCF1
Assay Reference Genome
Location

Chr.6:30580506 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02191244_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23

Gene Name:

 ATP binding cassette subfamily F member 1

Gene Aliases:

 ABC27, ABC50

Location:

 Chr.6:30571393-30591532 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 8 - Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCF1 NM_001025091.1 NP_001020262.1
NM_001090.2 NP_001081.1
AF027302.1 AAC70891.1
AK298061.1
AK307551.1
AL832430.1 CAH10648.1
BC034488.2 AAH34488.1
BC112923.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion CDSN PSORS1C3 MOG MDC1-AS1 OR2H2 ATAT1 HLA-K OR2H1 GABBR1 OR11A1 ABCF1 TRIM40 HLA-H PPP1R11 GNL1 ZNRD1ASP LOC554223 HCG9 HLA-C UBD DHX16 LOC101929006 PSORS1C2 HCG4B VARS2 IFITM4P DDR1 PPP1R18 LINC00243 HLA-A TRIM39 HLA-F-AS1 HLA-B LOC105375014 TRIM39-RPP21 HCG18 HCG27 OR12D2 ZFP57 SFTA2 MICA PPP1R10 MRPS18B SNORD32B TUBB FLOT1 TRIM26 ZNRD1 RPP21 TRIM15 GTF2H4 NRM TRIM31 OR12D3 HLA-G HLA-E IER3 DPCR1 MDC1 TCF19 PSORS1C1 OR5V1 RNF39 HLA-F HCG20 OR10C1 MIR4640 OR2J2 HLA-J HCG8 MIR877 HCG4 LINC01015 HLA-L MIR6891 MUC22 HCG22 TRIM10 OR14J1 CCHCR1 TRIM31-AS1 MUC21 MAS1L POU5F1 C6orf15 C6orf136 HCG17 PRR3
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss GTF2H4 CDSN PSORS1C3 MDC1-AS1 NRM ATAT1 HLA-E IER3 ABCF1 DPCR1 MDC1 TCF19 PSORS1C1 GNL1 HCG20 MIR4640 HLA-C DHX16 PSORS1C2 VARS2 MIR877 DDR1 MUC22 PPP1R18 LINC00243 HCG22 LOC105375014 CCHCR1 HCG27 MUC21 SFTA2 PPP1R10 MRPS18B POU5F1 C6orf15 TUBB C6orf136 FLOT1 PRR3
nsv5244 Chr.6:30577334 - 30622026 on Build GRCh38 Deletion MRPS18B MIR877 PPP1R10 ABCF1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion CDSN PSORS1C3 TRIM27 MOG MDC1-AS1 OR2H2 ATAT1 HLA-K OR2H1 GABBR1 OR11A1 HCG14 ABCF1 TRIM40 HLA-H PPP1R11 GNL1 ZNRD1ASP LOC554223 HCG9 UBD DHX16 LOC101929006 PSORS1C2 HCG4B VARS2 IFITM4P DDR1 PPP1R18 LINC00243 LINC00533 HLA-A TRIM39 HLA-F-AS1 LOC105375014 TRIM39-RPP21 HCG18 HCG27 OR12D2 ZFP57 SFTA2 ZNF311 PPP1R10 MRPS18B OR2B3 SNORD32B LINC01556 TUBB FLOT1 TRIM26 ZNRD1 RPP21 TRIM15 GTF2H4 NRM TRIM31 OR12D3 HLA-G HLA-E IER3 DPCR1 MDC1 TCF19 PSORS1C1 OR5V1 RNF39 HLA-F HCG20 OR10C1 MIR4640 OR2J2 HLA-J HCG8 MIR877 HCG4 LINC01015 HLA-L MUC22 HCG22 TRIM10 OR2W1 OR14J1 CCHCR1 TRIM31-AS1 MUC21 OR2J3 MAS1L LOC100129636 POU5F1 C6orf15 HCG16 LINC01623 C6orf136 HCG17 PRR3
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion CDSN PSORS1C3 MDC1-AS1 ATAT1 HLA-K ABCF1 TRIM40 HLA-H PPP1R11 GNL1 ZNRD1ASP LOC554223 HCG9 HLA-C DHX16 PSORS1C2 HCG4B VARS2 IFITM4P DDR1 PPP1R18 LINC00243 HLA-A TRIM39 HLA-F-AS1 LOC105375014 TRIM39-RPP21 HCG18 HCG27 SFTA2 PPP1R10 MRPS18B TUBB FLOT1 TRIM26 ZNRD1 RPP21 TRIM15 GTF2H4 NRM TRIM31 HLA-G HLA-E IER3 DPCR1 MDC1 TCF19 PSORS1C1 RNF39 HLA-F HCG20 MIR4640 HLA-J HCG8 MIR877 HCG4 HLA-L MUC22 HCG22 TRIM10 CCHCR1 TRIM31-AS1 MUC21 POU5F1 C6orf15 C6orf136 HCG17 PRR3
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion GTF2H4 CDSN PSORS1C3 MDC1-AS1 NRM ATAT1 HLA-E IER3 ABCF1 DPCR1 MDC1 TCF19 PSORS1C1 GNL1 HCG20 MIR4640 HLA-C DHX16 PSORS1C2 VARS2 MIR877 DDR1 MUC22 PPP1R18 LINC00243 HCG22 LOC105375014 CCHCR1 HCG27 MUC21 SFTA2 PPP1R10 MRPS18B POU5F1 C6orf15 TUBB C6orf136 FLOT1 PRR3
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss CDSN PSORS1C3 MDC1-AS1 ATAT1 HLA-K ABCF1 TRIM40 HLA-H PPP1R11 GNL1 ZNRD1ASP HCG9 HLA-C DHX16 PSORS1C2 HCG4B VARS2 DDR1 PPP1R18 LINC00243 HLA-A TRIM39 LOC105375014 TRIM39-RPP21 HCG18 HCG27 SFTA2 PPP1R10 MRPS18B TUBB FLOT1 TRIM26 ZNRD1 RPP21 TRIM15 GTF2H4 NRM TRIM31 HLA-E IER3 DPCR1 MDC1 TCF19 PSORS1C1 RNF39 HCG20 MIR4640 HLA-J HCG8 MIR877 HLA-L MUC22 HCG22 TRIM10 CCHCR1 TRIM31-AS1 MUC21 POU5F1 C6orf15 C6orf136 HCG17 PRR3
esv2670269 Chr.6:30498650 - 31067145 on Build GRCh38 Deletion GTF2H4 MDC1-AS1 NRM ATAT1 IER3 ABCF1 DPCR1 MDC1 GNL1 HCG20 MIR4640 DHX16 VARS2 MIR877 DDR1 MUC22 PPP1R18 LINC00243 HCG22 LOC105375014 MUC21 SFTA2 PPP1R10 MRPS18B TUBB C6orf136 FLOT1 PRR3
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication CDSN PSORS1C3 MDC1-AS1 ATAT1 ABCF1 TRIM40 PPP1R11 GNL1 ZNRD1ASP HLA-C DHX16 PSORS1C2 VARS2 DDR1 PPP1R18 LINC00243 TRIM39 HLA-B LOC105375014 TRIM39-RPP21 HCG18 HCG27 HCG26 SFTA2 MICA PPP1R10 MRPS18B TUBB FLOT1 TRIM26 ZNRD1 RPP21 HCP5 TRIM15 GTF2H4 NRM TRIM31 HLA-E IER3 DPCR1 MDC1 TCF19 PSORS1C1 RNF39 HCG20 MIR4640 HLA-J HCG8 MIR877 HLA-L MIR6891 MUC22 HCG22 TRIM10 CCHCR1 TRIM31-AS1 MUC21 LOC102725068 POU5F1 C6orf15 C6orf136 HCG17 PRR3

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

translation elongation factor

Gene Ontology Categories:

Function(s) Process(es)


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