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See other CYHR1 CNV Assays ›
Gene Symbol
CYHR1
Assay Reference Genome
Location

Chr.8:144465103 on build GRCh38
Cytoband
8q24.3
Assay ID Hs02199974_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 50626

Gene Name:

 cysteine and histidine rich 1

Gene Aliases:

 CHRP

Location:

 Chr.8:144449582-144465692 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 1 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CYHR1 NM_001129888.1 NP_001123360.1
NM_032687.3 NP_116076.1
NM_138496.1 NP_612505.1
XM_006716560.3 XP_006716623.1
XM_006716561.3 XP_006716624.1
XM_017013463.1 XP_016868952.1
XM_017013464.1 XP_016868953.1
XM_017013465.1 XP_016868954.1
XM_017013466.1 XP_016868955.1
AK094514.1
BC005073.1 AAH05073.1
BC065484.1 AAH65484.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv26548 Chr.8:144460914 - 144467035 on Build GRCh38 Gain KIFC2 CYHR1
nsv470249 Chr.8:143889098 - 144519234 on Build GRCh38 Loss SLC39A4 MIR661 CYC1 RECQL4 MROH1 SLC52A2 SMPD5 LOC101928902 GPAA1 DGAT1 EXOSC4 CYHR1 SPATC1 MIR6847 MIR6849 LRRC14 TMEM249 MFSD3 SHARPIN MIR6893 PPP1R16A MIR7112 SCRT1 HGH1 MAF1 GPT FBXL6 VPS28 CPSF1 HSF1 FOXH1 PARP10 GRINA SCX TONSL MIR939 ADCK5 KIFC2 MIR1234 OPLAH MIR6848 WDR97 LOC101928953 TONSL-AS1 MIR6846 PLEC BOP1
nsv831489 Chr.8:144342140 - 144544026 on Build GRCh38 Loss SLC39A4 RECQL4 SLC52A2 LOC101928902 CYHR1 MIR6849 LRRC14 TMEM249 MFSD3 MIR6893 PPP1R16A C8orf82 GPT FBXL6 VPS28 CPSF1 FOXH1 TONSL MIR939 ADCK5 KIFC2 MIR1234 LRRC24 LOC101928953 TONSL-AS1 ARHGAP39
dgv12439n54 Chr.8:144438306 - 144525122 on Build GRCh38 Loss GPT KIFC2 RECQL4 LRRC24 FOXH1 LOC101928953 LRRC14 TONSL-AS1 MFSD3 PPP1R16A TONSL CYHR1
dgv907n27 Chr.8:144416180 - 144525122 on Build GRCh38 Loss SLC39A4 GPT VPS28 RECQL4 FOXH1 TONSL CYHR1 KIFC2 LRRC24 LOC101928953 LRRC14 TONSL-AS1 MFSD3 MIR6893 PPP1R16A
nsv612947 Chr.8:144464532 - 144467429 on Build GRCh38 Loss KIFC2 CYHR1
dgv12434n54 Chr.8:144270080 - 144516801 on Build GRCh38 Loss SLC39A4 RECQL4 SLC52A2 LOC101928902 DGAT1 CYHR1 MIR6849 TMEM249 MFSD3 MIR6893 PPP1R16A SCRT1 GPT FBXL6 VPS28 CPSF1 HSF1 FOXH1 TONSL MIR939 ADCK5 KIFC2 MIR1234 MIR6848 LOC101928953 TONSL-AS1 BOP1
esv2759652 Chr.8:144300010 - 144472295 on Build GRCh38 Gain+Loss SLC39A4 FBXL6 VPS28 CPSF1 HSF1 SLC52A2 LOC101928902 DGAT1 TONSL CYHR1 MIR939 ADCK5 KIFC2 MIR1234 MIR6849 MIR6848 TMEM249 TONSL-AS1 MIR6893 SCRT1
nsv515809 Chr.8:143904439 - 144519234 on Build GRCh38 Gain+Loss SLC39A4 MIR661 CYC1 RECQL4 MROH1 SLC52A2 SMPD5 LOC101928902 GPAA1 DGAT1 EXOSC4 CYHR1 SPATC1 MIR6847 MIR6849 LRRC14 TMEM249 MFSD3 SHARPIN MIR6893 PPP1R16A MIR7112 SCRT1 HGH1 MAF1 GPT FBXL6 VPS28 CPSF1 HSF1 FOXH1 PARP10 GRINA SCX TONSL MIR939 ADCK5 KIFC2 MIR1234 OPLAH MIR6848 WDR97 LOC101928953 TONSL-AS1 MIR6846 PLEC BOP1
nsv612946 Chr.8:144463867 - 144469886 on Build GRCh38 Loss KIFC2 CYHR1
dgv12440n54 Chr.8:144463603 - 144474259 on Build GRCh38 Loss KIFC2 FOXH1 CYHR1
nsv612940 Chr.8:144436292 - 144613673 on Build GRCh38 Loss GPT RECQL4 FOXH1 TONSL CYHR1 KIFC2 LRRC24 LOC101928953 LRRC14 TONSL-AS1 MFSD3 PPP1R16A C8orf82 ARHGAP39
nsv428208 Chr.8:144041826 - 144722291 on Build GRCh38 Gain SLC39A4 CYC1 RECQL4 MROH1 SLC52A2 SMPD5 LOC101928902 ZNF251 GPAA1 DGAT1 EXOSC4 CYHR1 SPATC1 MIR6847 MIR6849 LRRC14 TMEM249 MFSD3 SHARPIN MIR6893 PPP1R16A MIR7112 C8orf82 SCRT1 HGH1 MAF1 GPT FBXL6 VPS28 CPSF1 HSF1 FOXH1 SCX TONSL MIR939 ADCK5 KIFC2 MIR1234 OPLAH MIR6848 LRRC24 WDR97 LOC101928953 TONSL-AS1 MIR6846 BOP1 ARHGAP39
esv29999 Chr.8:144456732 - 144525122 on Build GRCh38 Loss GPT KIFC2 RECQL4 LRRC24 FOXH1 LOC101928953 LRRC14 MFSD3 PPP1R16A CYHR1

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More Information


Additional Information:

For this assay, SNP(s) [rs112105560] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Process(es)


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