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See other SMG1 CNV Assays ›
Gene Symbol
SMG1
Assay Reference Genome
Location

Chr.16:18809489 on build GRCh38
Cytoband
16p12.3
Assay ID Hs02281024_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 23049

Gene Name:

 SMG1, nonsense mediated mRNA decay associated PI3K related kinase

Gene Aliases:

 61E3.4, ATX, LIP

Location:

 Chr.16:18804853-18926417 on Build GRCh38

Assay Gene Location:

 Within Exon 64
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMG1 NM_015092.4 63 11429 NP_055907.3
XM_005255182.3 62 11526 XP_005255239.1
XM_005255183.3 63 11584 XP_005255240.1
XM_005255184.3 61 11370 XP_005255241.1
XM_011545769.2 62 11523 XP_011544071.1
XM_011545770.1 50 9323 XP_011544072.1
XM_017023066.1 62 11336 XP_016878555.1
XM_017023067.1 50 9386 XP_016878556.1
AB007881.2 31 6047 BAA24851.2
AB061371.1 64 11381 BAB70696.1
AF186377.1 38 7410 AAK58892.1
AF395444.1 61 10736 AAM73708.1
AK057563.1 1 1019
AK123332.1 1 1872
AL833298.1 24 4767
AY014957.1 51 9308 AAK00511.1
U32581.2 13 2439 AAA86535.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1044846 Chr.16:18666777 - 18820585 on Build GRCh38 Gain ARL6IP1 SMG1 RPS15A
nsv833161 Chr.16:18694997 - 18883103 on Build GRCh38 Loss ARL6IP1 SMG1 RPS15A
nsv428320 Chr.16:18077459 - 18828668 on Build GRCh38 Loss MIR3670-4 MIR3179-3 ARL6IP1 SMG1 MIR6511A4 LOC105376752 LOC102723728 MIR3180-3 MIR3670-3 MIR3179-4 ABCC6P1 NPIPA8 RPS15A MIR6770-3 NOMO2
nsv469598 Chr.16:18650989 - 18828668 on Build GRCh38 Gain ARL6IP1 SMG1 RPS15A
nsv571579 Chr.16:18793415 - 19238897 on Build GRCh38 Gain ITPRIPL2 SYT17 ARL6IP1 SMG1 LOC102723385 TMC7 COQ7
esv2758634 Chr.16:17440243 - 19147984 on Build GRCh38 Gain+Loss ITPRIPL2 MIR3670-4 MIR3179-3 ARL6IP1 SMG1 LOC102723385 TMC7 MIR6511A4 LOC105376752 COQ7 LOC102723728 MIR3180-3 MIR3670-3 MIR3179-4 ABCC6P1 XYLT1 NPIPA8 RPS15A MIR6770-3 NOMO2
esv34419 Chr.16:18170242 - 19071899 on Build GRCh38 Gain MIR3670-4 MIR3179-3 ARL6IP1 SMG1 LOC102723385 TMC7 MIR6511A4 LOC105376752 COQ7 LOC102723728 MIR3180-3 MIR3670-3 MIR3179-4 ABCC6P1 NPIPA8 RPS15A MIR6770-3 NOMO2
esv3570409 Chr.16:18759489 - 19177870 on Build GRCh38 Gain ITPRIPL2 SYT17 ARL6IP1 SMG1 LOC102723385 TMC7 COQ7 RPS15A
nsv1752 Chr.16:18796774 - 18839756 on Build GRCh38 Deletion ARL6IP1 SMG1

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