Hs02288790_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88678316 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3	3	1079	NP_840101.1
	BC041461.1	3	986	AAH41461.1
	BC107058.2	3	1079	AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1
	BX640980.1	6	3422

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	MIR4722 SNAI3-AS1 CTU2 LOC100289580 RNF166 MVD LOC339059 PIEZO1 CYBA SNAI3
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	MIR4722 SNAI3-AS1 CTU2 LOC100289580 RNF166 MVD PIEZO1 SNAI3
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	MIR4722 SNAI3-AS1 CTU2 LOC100289580 RNF166 LOC339059 PIEZO1 SNAI3
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	SNAI3-AS1 ZC3H18 RNF166 MVD IL17C ZC3H18-AS1 CYBA SNAI3
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	CTU2 LOC100289580 ZC3H18 RNF166 MVD MIR5189 IL17C ZC3H18-AS1 PIEZO1 CYBA SNAI3 MIR4722 SNAI3-AS1 ZNF469 LOC339059 ZFPM1 LOC107984862
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	AFG3L1P MC1R DBNDD1 PIEZO1 DEF8 TUBB3 GALNS TCF25 CPNE7 DPEP1 CBFA2T3 VPS9D1 LOC400558 LOC101927793 APRT FANCA ANKRD11 IL17C RPL13 LOC105371414 ZNF276 LOC107984817 CDT1 SNAI3-AS1 GAS8-AS1 LINC00304 CHMP1A URAHP SPIRE2 LOC101927817 SPG7 SNORD68 LOC100129697 CTU2 CDK10 ZNF778 RNF166 MVD VPS9D1-AS1 TRAPPC2L CYBA SNAI3 LOC105371409 PABPN1L CDH15 LOC339059 LOC100287036 TUBB8P7 LOC107987238 LOC100289580 GAS8 LOC105371419 SPATA33 CENPBD1 SLC22A31 SPATA2L MIR4722 ACSF3 PRDM7 FAM157C
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3-AS1 SNAI3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding