Hs02308509_cn

• Gene Symbol: LINC00403
• Assay Reference Genome Location: Chr.13:112071206 on build GRCh38
• Cytoband: 13q34

Target Gene Details

• Entrez Gene ID: 100505996
• Gene Name: long intergenic non-protein coding RNA 403
• Gene Aliases: -
• Location: Chr.13:111972310-112108015 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LINC00403	NR_120392.1
	AK091058.1
	DA195709.1

Target Gene Details

• Entrez Gene ID: 6656
• Gene Name: SRY-box 1
• Gene Aliases: -
• Location: Chr.13:112067599-112071706 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SOX1	NM_005986.2	1	3608	NP_005977.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv351n67	Chr.13:112033868 - 112116516 on Build GRCh38	Gain	LINC00403 SOX1 LOC105378193
nsv563189	Chr.13:111979751 - 112146300 on Build GRCh38	Loss	LINC00403 SOX1 LOC105378193
nsv832722	Chr.13:112055927 - 112247292 on Build GRCh38	Loss	LOC100506016 LINC00403 SOX1 LINC01070
dgv352n67	Chr.13:112064263 - 112071929 on Build GRCh38	Gain	LINC00403 SOX1
nsv826816	Chr.13:112048745 - 112080890 on Build GRCh38	Gain	LINC00403 SOX1
nsv826815	Chr.13:112039819 - 112098509 on Build GRCh38	Loss	LINC00403 SOX1
nsv826807	Chr.13:112034289 - 112083084 on Build GRCh38	Gain	LINC00403 SOX1 LOC105378193
nsv826813	Chr.13:112038383 - 112141293 on Build GRCh38	Gain	LINC00403 SOX1
nsv819531	Chr.13:112070569 - 112072198 on Build GRCh38	Gain	LINC00403 SOX1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

HMG box transcription factor

Gene Ontology Categories:

Process(es)

neuron migration
lens morphogenesis in camera-type eye
chromatin organization
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
ventral spinal cord interneuron specification
forebrain neuron development
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding