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See other GPANK1 CNV Assays ›
Gene Symbol
GPANK1
Assay Reference Genome
Location

Chr.6:31664982 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02325338_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 7918

Gene Name:

 G-patch domain and ankyrin repeats 1

Gene Aliases:

 ANKRD59, BAT4, D6S54E, G5, GPATCH10

Location:

 Chr.6:31661229-31666283 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPANK1 NM_001199237.1 NP_001186166.1
NM_001199238.1 NP_001186167.1
NM_001199239.1 NP_001186168.1
NM_001199240.1 NP_001186169.1
NM_033177.3 1 421 NP_149417.1
XM_005249403.3 XP_005249460.1
XM_006715204.1 XP_006715267.1
XM_011514909.1 XP_011513211.1
XM_011514910.1 XP_011513212.1
AJ420471.1
AK123707.1
AK314056.1
BC008783.1 1 411 AAH08783.1
DA368924.1 1 421

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion HLA-DRB6 AIF1 BAG6 HLA-DRA LY6G5B PRRT1 LSM2 NOTCH4 TNF NCR3 HLA-DRB5 DXO ZBTB12 HSPA1B LOC100287329 MIR6832 CSNK2B C6orf48 DDX39B SAPCD1-AS1 ATP6V1G2-DDX39B MICB CYP21A2 MCCD1 CLIC1 DDX39B-AS1 NFKBIL1 PBX2 HCP5 MSH5 MSH5-SAPCD1 LY6G5C EGFL8 HCG26 SAPCD1 SLC44A4 C6orf10 C4A PPT2 LY6G6F LY6G6D NEU1 DDAH2 HLA-DRB1 CYP21A1P EHMT2 C2-AS1 HCG23 SNORD52 TNXB MIR1236 AGPAT1 LY6G6C SNORA38 HSPA1L HSPA1A ABHD16A STK19 C4B LOC100507547 SKIV2L C6orf25 VWA7 SNORD48 LY6G6E CFB SNORD117 C6orf47 ATP6V1G2 APOM LTA SNORD84 MIR6833 FKBPL LOC101929163 MIR6721 TNXA VARS BTNL2 LTB GPSM3 PRRC2A RNF5 GPANK1 C2 LOC102725068 PPT2-EGFL8 MIR4646 NELFE LST1 ATF6B AGER
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HLA-DRB6 PFDN6 PSMB8 AIF1 HLA-DRA PSMB8-AS1 HLA-DQB2 CUTA HLA-DRB5 HLA-DPB1 ZBTB12 LOC100287329 CSNK2B DDX39B ATP6V1G2-DDX39B MICB CYP21A2 DDX39B-AS1 NFKBIL1 PBX2 HCP5 MSH5-SAPCD1 MIR5004 LY6G5C BRD2 C6orf10 PPT2 HLA-DMA NEU1 LOC100294145 HCG24 DDAH2 VPS52 EHMT2 PHF1 TNXB SNORA38 ABHD16A LOC100507547 HLA-DMB HLA-DOB VWA7 COL11A2 SNORD48 SNORD117 ZBTB22 ATP6V1G2 FKBPL LOC101929163 MIR6721 VARS LTB PRRC2A RNF5 B3GALT4 GPANK1 C2 HLA-DQB1 PPT2-EGFL8 MIR4646 NELFE HLA-DPB2 RING1 TAPBP RPS18 BAG6 LY6G5B TAP1 PRRT1 LSM2 RXRB NOTCH4 RGL2 DAXX TNF NCR3 TAP2 HLA-DQA1 DXO HSPA1B MIR6832 C6orf48 PSMB9 SAPCD1-AS1 MCCD1 CLIC1 MSH5 EGFL8 HCG26 HLA-DOA SAPCD1 SLC44A4 C4A LY6G6F LY6G6D SLC39A7 HLA-DRB1 CYP21A1P C2-AS1 HCG23 SNORD52 MIR1236 AGPAT1 LY6G6C HSPA1L HSPA1A STK19 C4B ZBTB9 SKIV2L WDR46 C6orf25 HLA-DPA1 HLA-DQB1-AS1 LY6G6E HLA-DQA2 CFB C6orf47 MIR6834 HCG25 APOM LTA SNORD84 MIR6833 TNXA HSD17B8 BTNL2 SYNGAP1 MIR6873 GPSM3 PPP1R2P1 LOC102725068 KIFC1 MIR3135B MIR219A1 LST1 ATF6B AGER
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MIR6891 AIF1 BAG6 LY6G5B HLA-B LSM2 TNF NCR3 DXO ZBTB12 HSPA1B LOC100287329 MIR6832 CSNK2B C6orf48 DDX39B SAPCD1-AS1 ATP6V1G2-DDX39B MICB CYP21A2 MCCD1 CLIC1 DDX39B-AS1 MICA NFKBIL1 HCP5 MSH5 MSH5-SAPCD1 LY6G5C HCG26 SAPCD1 SLC44A4 C4A LY6G6F LY6G6D NEU1 DDAH2 CYP21A1P EHMT2 C2-AS1 SNORD52 TNXB MIR1236 LY6G6C SNORA38 HSPA1L HSPA1A ABHD16A STK19 C4B SKIV2L C6orf25 VWA7 SNORD48 LY6G6E CFB SNORD117 C6orf47 ATP6V1G2 APOM LTA SNORD84 TNXA VARS LTB PRRC2A GPANK1 C2 LOC102725068 MIR4646 NELFE LST1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HLA-DRB6 PFDN6 PSMB8 AIF1 HLA-DRA PSMB8-AS1 HLA-DQB2 CUTA HLA-DRB5 HLA-DPB1 ZBTB12 LOC100287329 CSNK2B DDX39B ATP6V1G2-DDX39B MICB CYP21A2 DDX39B-AS1 NFKBIL1 PBX2 HCP5 MSH5-SAPCD1 MIR5004 LY6G5C BRD2 C6orf10 PPT2 HLA-DMA NEU1 LOC100294145 HCG24 DDAH2 VPS52 EHMT2 PHF1 TNXB SNORA38 ABHD16A LOC100507547 HLA-DMB HLA-DOB VWA7 COL11A2 SNORD48 SNORD117 ZBTB22 ATP6V1G2 FKBPL LOC101929163 MIR6721 VARS LTB PRRC2A RNF5 B3GALT4 GPANK1 C2 HLA-DQB1 PPT2-EGFL8 MIR4646 NELFE HLA-DPB2 RING1 TAPBP RPS18 BAG6 LY6G5B TAP1 PRRT1 LSM2 RXRB NOTCH4 RGL2 DAXX TNF NCR3 TAP2 HLA-DQA1 DXO HSPA1B MIR6832 C6orf48 PSMB9 SAPCD1-AS1 MCCD1 CLIC1 MSH5 EGFL8 HCG26 HLA-DOA SAPCD1 SLC44A4 C4A LY6G6F LY6G6D SLC39A7 HLA-DRB1 CYP21A1P C2-AS1 HCG23 SNORD52 MIR1236 AGPAT1 LY6G6C HSPA1L HSPA1A STK19 C4B ZBTB9 SKIV2L WDR46 C6orf25 HLA-DPA1 HLA-DQB1-AS1 LY6G6E HLA-DQA2 CFB C6orf47 MIR6834 HCG25 APOM LTA SNORD84 MIR6833 TNXA HSD17B8 BTNL2 SYNGAP1 MIR6873 GPSM3 PPP1R2P1 LOC102725068 KIFC1 MIR3135B MIR219A1 LST1 ATF6B AGER
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MIR6891 AIF1 BAG6 HLA-DRA LY6G5B PRRT1 HLA-B LSM2 NOTCH4 TNF NCR3 DXO ZBTB12 HSPA1B LOC100287329 MIR6832 CSNK2B C6orf48 DDX39B SAPCD1-AS1 ATP6V1G2-DDX39B MICB CYP21A2 MCCD1 CLIC1 DDX39B-AS1 MICA NFKBIL1 PBX2 HCP5 MSH5 MSH5-SAPCD1 LY6G5C EGFL8 HCG26 SAPCD1 SLC44A4 C6orf10 C4A PPT2 LY6G6F LY6G6D NEU1 DDAH2 CYP21A1P EHMT2 C2-AS1 HCG23 SNORD52 TNXB MIR1236 AGPAT1 LY6G6C SNORA38 HSPA1L HSPA1A ABHD16A STK19 C4B LOC100507547 SKIV2L C6orf25 VWA7 SNORD48 LY6G6E CFB SNORD117 C6orf47 ATP6V1G2 APOM LTA SNORD84 MIR6833 FKBPL LOC101929163 MIR6721 TNXA VARS BTNL2 LTB GPSM3 PRRC2A RNF5 GPANK1 C2 LOC102725068 PPT2-EGFL8 MIR4646 NELFE LST1 ATF6B AGER
nsv1161370 Chr.6:31600692 - 31714252 on Build GRCh38 Deletion APOM AIF1 BAG6 LY6G5B SNORA38 ABHD16A LY6G5C PRRC2A GPANK1 LY6G6F MIR4646 LY6G6E MIR6832 CSNK2B C6orf47
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss AIF1 BAG6 LY6G5B SNORA38 ABHD16A TNF NCR3 LOC100287329 MIR6832 CSNK2B SNORD117 C6orf47 DDX39B ATP6V1G2 ATP6V1G2-DDX39B APOM LTA SNORD84 MCCD1 DDX39B-AS1 NFKBIL1 LTB LY6G5C PRRC2A GPANK1 LST1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Process(es)


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