Hs02341576_cn

• Gene Symbol: NFATC2IP
• Assay Reference Genome Location: Chr.16:28954686 on build GRCh38
• Cytoband: 16p11.2

Target Gene Details

• Entrez Gene ID: 84901
• Gene Name: nuclear factor of activated T-cells 2 interacting protein
• Gene Aliases: ESC2, NIP45, RAD60
• Location: Chr.16:28950988-28967097 on Build GRCh38
• Assay Gene Location: Overlaps Exon 3 - Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NFATC2IP	NM_032815.3			NP_116204.3
	AF458593.1			AAM49721.1
	AK074761.1			BAC11189.1
	BC018311.1
	BC068007.1			AAH68007.1
	BC080628.1			AAH80628.1
	BC101741.1			AAI01742.1
	BC112182.1			AAI12183.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4987n54	Chr.16:28824884 - 29032129 on Build GRCh38	Gain	SH2B1 CD19 ATP2A1-AS1 MIR4721 NFATC2IP RABEP2 LAT ATXN2L TUFM SPNS1 ATP2A1 MIR4517
esv3892826	Chr.16:28814728 - 29032129 on Build GRCh38	Gain+Loss	SH2B1 CD19 ATP2A1-AS1 MIR4721 NFATC2IP RABEP2 LAT ATXN2L TUFM SPNS1 ATP2A1 MIR4517
esv2758640	Chr.16:28163817 - 29139232 on Build GRCh38	Gain+Loss	SULT1A2 LAT MIR6862-1 MIR4517 NPIP MIR6862-2 RRN3P2 CD19 SULT1A1 MIR4721 ATXN2L NUPR1 ATP2A1 SBK1 EIF3CL ATP2A1-AS1 IL27 CLN3 NFATC2IP APOBR SGF29 LOC101928215 NPIPB9 NPIPB8 SH2B1 RABEP2 XPO6 TUFM EIF3C SPNS1 NPIPB6
nsv518648	Chr.16:28826194 - 29032129 on Build GRCh38	Loss	SH2B1 CD19 ATP2A1-AS1 MIR4721 NFATC2IP RABEP2 LAT ATXN2L TUFM SPNS1 ATP2A1 MIR4517
nsv1059555	Chr.16:28373144 - 29195838 on Build GRCh38	Gain	SULT1A2 LAT MIR6862-1 MIR4517 NPIP MIR6862-2 RRN3P2 LOC107984832 CD19 SULT1A1 MIR4721 ATXN2L NUPR1 ATP2A1 EIF3CL ATP2A1-AS1 IL27 CLN3 NFATC2IP APOBR SGF29 LOC101928215 NPIPB9 NPIPB8 SH2B1 RABEP2 TUFM EIF3C SPNS1
dgv2831n100	Chr.16:28812594 - 29032542 on Build GRCh38	Gain	SH2B1 CD19 ATP2A1-AS1 MIR4721 NFATC2IP RABEP2 LAT ATXN2L TUFM SPNS1 ATP2A1 MIR4517
esv3570454	Chr.16:28799004 - 29032129 on Build GRCh38	Gain	SH2B1 CD19 ATP2A1-AS1 MIR4721 NFATC2IP RABEP2 LAT ATXN2L TUFM SPNS1 ATP2A1 MIR4517
nsv571805	Chr.16:28824174 - 29032129 on Build GRCh38	Loss	SH2B1 CD19 ATP2A1-AS1 MIR4721 NFATC2IP RABEP2 LAT ATXN2L TUFM SPNS1 ATP2A1 MIR4517
dgv2830n100	Chr.16:28620264 - 29032542 on Build GRCh38	Gain	ATP2A1-AS1 NFATC2IP LAT NPIPB9 MIR4517 MIR6862-2 NPIPB8 SH2B1 CD19 SULT1A1 MIR4721 RABEP2 ATXN2L TUFM EIF3C SPNS1 ATP2A1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cytokine production
protein sumoylation
positive regulation of transcription from RNA polymerase II promoter

Function(s)

protein tag