Hs02421885_cn

• Gene Symbol: TAF1C
• Assay Reference Genome Location: Chr.16:84180131 on build GRCh38
• Cytoband: 16q24.1

Target Gene Details

• Entrez Gene ID: 9013
• Gene Name: TATA-box binding protein associated factor, RNA polymerase I subunit C
• Gene Aliases: MGC:39976, SL1, TAFI110, TAFI95
• Location: Chr.16:84177847-84187070 on Build GRCh38
• Assay Gene Location: Overlaps Exon 12 - Exon 13

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TAF1C	NM_001243156.1			NP_001230085.1
	NM_001243157.1			NP_001230086.1
	NM_001243158.1			NP_001230087.1
	NM_001243159.1			NP_001230088.1
	NM_001243160.1			NP_001230089.1
	NM_005679.3			NP_005670.3
	NM_139353.2			NP_647610.2
	XM_005256226.3			XP_005256283.1
	XM_005256227.3			XP_005256284.1
	XM_006721325.3			XP_006721388.1
	XM_006721326.3			XP_006721389.1
	XM_017023845.1			XP_016879334.1
	XM_017023846.1			XP_016879335.1
	XM_017023847.1			XP_016879336.1
	XM_017023848.1			XP_016879337.1
	AB209594.1			BAD92831.1
	AK097031.1
	AK299060.1
	AK299347.1
	AK304261.1
	AK315982.1
	BC028131.1			AAH28131.1
	L39059.1			AAA62861.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3639413	Chr.16:84172318 - 84253359 on Build GRCh38	Loss	ADAD2 KCNG4 DNAAF1 TAF1C
nsv833309	Chr.16:84076867 - 84248591 on Build GRCh38	Loss	ADAD2 KCNG4 DNAAF1 TAF1C MBTPS1 HSDL1 LOC729887
nsv1065790	Chr.16:83830329 - 84243597 on Build GRCh38	Loss	NECAB2 OSGIN1 ADAD2 MLYCD SLC38A8 LOC105371371 KCNG4 DNAAF1 TAF1C MBTPS1 HSDL1 LOC729887
esv2761930	Chr.16:84007420 - 84312461 on Build GRCh38	Gain	WFDC1 ADAD2 LOC105376777 SLC38A8 KCNG4 DNAAF1 TAF1C MBTPS1 HSDL1 LOC729887
nsv523437	Chr.16:84176132 - 84196770 on Build GRCh38	Loss	ADAD2 DNAAF1 TAF1C
nsv573423	Chr.16:84179104 - 84190716 on Build GRCh38	Loss	TAF1C
esv3639414	Chr.16:84176251 - 84352273 on Build GRCh38	Loss	WFDC1 ADAD2 LOC105376777 KCNG4 DNAAF1 TAF1C
esv3639412	Chr.16:84170074 - 84221406 on Build GRCh38	Loss	ADAD2 KCNG4 DNAAF1 TAF1C
nsv573422	Chr.16:84178502 - 84180359 on Build GRCh38	Loss	DNAAF1 TAF1C
nsv483044	Chr.16:84166395 - 87066394 on Build GRCh38	Gain	COTL1 MIR6774 LOC400548 COX4I1 TAF1C FAM92B USP10 MIR5093 FOXF1 FENDRR LOC102724344 ZDHHC7 FOXC2-AS1 ATP2C2 LOC105376777 KIAA0513 GINS2 FOXL1 MIR1910 IRF8 MTHFSD LINC00311 GSE1 ADAD2 CRISPLD2 LINC01082 KCNG4 FLJ30679 EMC8 LOC105371374 LOC440390 FOXC2 LOC101928614 KLHL36 WFDC1 LOC101928474 LINC01081 LINC00917 LOC146513 C16orf74 TLDC1 LOC101928557 DNAAF1
nsv1059227	Chr.16:84029323 - 84233403 on Build GRCh38	Loss	ADAD2 SLC38A8 KCNG4 DNAAF1 TAF1C MBTPS1 HSDL1 LOC729887

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA-directed RNA polymerase

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
transcription from RNA polymerase I promoter
transcription initiation from RNA polymerase I promoter
transcription elongation from RNA polymerase I promoter
termination of RNA polymerase I transcription
transcription from RNA polymerase II promoter
positive regulation of gene expression, epigenetic

Function(s)

RNA polymerase I CORE element sequence-specific DNA binding
protein binding