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See other ALKBH4 CNV Assays ›
Gene Symbol
ALKBH4
Assay Reference Genome
Location

Chr.7:102457231 on build GRCh38
Cytoband
7q22.1
Assay ID Hs02501386_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54784

Gene Name:

 alkB homolog 4, lysine demethylase

Gene Aliases:

 ABH4

Location:

 Chr.7:102456220-102464874 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ALKBH4 NM_017621.3 3 1110 NP_060091.1
XM_005250464.2 3 1003 XP_005250521.1
XM_005250465.2 3 1089 XP_005250522.1
AK000020.1 3 1097 BAA90888.1
AK026097.1 3 1008 BAB15358.1
AK222689.1 3 1099 BAD96409.1
BC002820.2 3 1077 AAH02820.1
BC017096.1 3 1077 AAH17096.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv831083 Chr.7:102340560 - 102655422 on Build GRCh38 Loss MIR548O UPK3BL LOC107983993 MIR4467 SPDYE2 ALKBH4 LOC102724229 RASA4 SPDYE6 MIR5090 ORAI2 SPDYE2B RASA4B PRKRIP1 POLR2J2 LOC100630923 POLR2J3 LRWD1 LOC100289561 POLR2J
nsv824248 Chr.7:102456578 - 102457204 on Build GRCh38 Gain ALKBH4 ORAI2
nsv8192 Chr.7:102450605 - 102692752 on Build GRCh38 Gain UPK3BL LOC107983993 MIR4467 SPDYE2 ALKBH4 LOC102724229 RASA4 MIR5090 ORAI2 SPDYE2B RASA4B POLR2J2 POLR2J3 LRWD1 POLR2J
nsv428182 Chr.7:102257460 - 102735503 on Build GRCh38 Gain MIR548O UPK3BL FBXL13 LOC107983993 MIR4467 SPDYE2 ALKBH4 LOC102724229 RASA4 CUX1 MIR4285 SPDYE6 MIR5090 ORAI2 SPDYE2B RASA4B PRKRIP1 POLR2J2 LOC100630923 POLR2J3 SH2B2 LRWD1 LOC100289561 POLR2J
dgv6538n100 Chr.7:102171110 - 103063688 on Build GRCh38 Gain MIR548O UPK3BL RASA4 CUX1 MIR5090 SPDYE2B RASA4B LOC100630923 POLR2J3 LOC100289561 FAM185A FBXL13 LOC107983993 MIR4467 SPDYE2 ALKBH4 LOC102724229 MIR4285 SPDYE6 NFE4 ORAI2 PRKRIP1 POLR2J2 SH2B2 LRWD1 POLR2J LRRC17
nsv607998 Chr.7:102385213 - 102473462 on Build GRCh38 Gain+Loss PRKRIP1 MIR548O LOC100630923 MIR4467 LRWD1 ALKBH4 POLR2J MIR5090 ORAI2
nsv5879 Chr.7:102450321 - 102747356 on Build GRCh38 Deletion UPK3BL FBXL13 LOC107983993 MIR4467 SPDYE2 ALKBH4 LOC102724229 RASA4 MIR5090 ORAI2 SPDYE2B RASA4B POLR2J2 POLR2J3 LRWD1 POLR2J
nsv607999 Chr.7:102451288 - 102473452 on Build GRCh38 Loss MIR4467 LRWD1 ALKBH4 POLR2J MIR5090 ORAI2

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More Information


Additional Information:

For this assay, SNP(s) [rs112440195] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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