Hs02518302_cn

• Gene Symbol: GATS
• Assay Reference Genome Location: Chr.7:100221451 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 352954
• Gene Name: GATS, stromal antigen 3 opposite strand
• Gene Aliases: STAG3OS
• Location: Chr.7:100187988-100272274 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATS	NM_178831.6			NP_849153.3
	NR_028038.1
	NR_028039.1
	NR_028040.1
	XM_017012153.1			XP_016867642.1
	XM_017012154.1			XP_016867643.1
	XM_017012155.1			XP_016867644.1
	XM_017012156.1			XP_016867645.1
	XM_017012157.1			XP_016867646.1
	XM_017012158.1			XP_016867647.1
	AK056608.1
	AK091418.1
	AK092358.1			BAC03870.1
	AK095056.1
	AK290039.1
	AK290237.1
	AK290510.1
	BC033723.1			AAH33723.1
	BC044886.1			AAH44886.2
	BC053367.1			AAH53367.1
	BC065200.1			AAH65200.1
	BC090867.1			AAH90867.1
	CR749506.1			CAH18327.1
	DA737015.1

Target Gene Details

• Entrez Gene ID: 79037
• Gene Name: poliovirus receptor related immunoglobulin domain containing
• Gene Aliases: C7orf15, CD112R
• Location: Chr.7:100218625-100221489 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PVRIG	NM_024070.3			NP_076975.2
	XM_011516575.2			XP_011514877.1
	BC001129.2			AAH01129.1
	BC073861.1			AAH73861.1
	BC107873.1	7	1557	AAI07874.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3614293	Chr.7:100215867 - 100342885 on Build GRCh38	Gain	STAG3L5P-PVRIG2P-PILRB GATS SPDYE3 STAG3 PMS2P1 STAG3L5P PVRIG
esv2734890	Chr.7:100214547 - 100344543 on Build GRCh38	Deletion	STAG3L5P-PVRIG2P-PILRB GATS SPDYE3 STAG3 PMS2P1 STAG3L5P PVRIG
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	ACTL6B AZGP1P1 STAG3 MBLAC1 ZCWPW1 LOC102724094 GIGYF1 PPP1R35 EPHB4 ZASP MUC17 CLDN15 ZNHIT1 PILRB TSC22D4 MIR4653 STAG3L5P FBXO24 CNPY4 ZNF3 EPO MIR93 UFSP1 LAMTOR4 GATS COPS6 ACHE MIR25 ZKSCAN1 MUC12 MIR6840 MCM7 MIR4658 FIS1 SERPINE1 MIR106B STAG3L5P-PVRIG2P-PILRB PLOD3 PCOLCE LOC105375429 SRRT GAL3ST4 VGF POP7 ZSCAN21 AP1S1 TFR2 C7orf61 TRIM56 MOSPD3 MEPCE PILRA C7orf43 NYAP1 AZGP1 ZAN AP4M1 MIR6875 PMS2P1 SAP25 GPC2 TRIP6 PVRIG2P TAF6 AGFG2 GNB2 LRCH4 SPDYE3 PCOLCE-AS1 NAT16 PVRIG MUC3A SLC12A9 MOGAT3
esv3614292	Chr.7:100213833 - 100241396 on Build GRCh38	Gain	GATS STAG3 PVRIG
nsv428180	Chr.7:100153358 - 100363277 on Build GRCh38	Gain	PILRB STAG3L5P-PVRIG2P-PILRB STAG3 PMS2P1 STAG3L5P GPC2 GAL3ST4 PVRIG2P LAMTOR4 GATS SPDYE3 MIR6840 PVRIG C7orf43 MIR4658
nsv436898	Chr.7:100220568 - 100341765 on Build GRCh38	Insertion	STAG3L5P-PVRIG2P-PILRB GATS SPDYE3 PMS2P1 STAG3L5P PVRIG
nsv8182	Chr.7:100202193 - 100282158 on Build GRCh38	Gain	GATS STAG3 PVRIG
esv26986	Chr.7:100211754 - 100339724 on Build GRCh38	Gain	STAG3L5P-PVRIG2P-PILRB GATS SPDYE3 STAG3 PMS2P1 STAG3L5P PVRIG

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation