Hs02539148_cn

• Gene Symbol: FAM166A
• Assay Reference Genome Location: Chr.9:137245100 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401565
• Gene Name: family with sequence similarity 166 member A
• Gene Aliases: HSD46
• Location: Chr.9:137243583-137251193 on Build GRCh38
• Assay Gene Location: Overlaps Intron 5 - Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM166A	NM_001001710.2			NP_001001710.1
	XM_006717108.2			XP_006717171.2
	XM_011518694.1			XP_011516996.1
	XM_011518695.1			XP_011516997.1
	XM_011518696.2			XP_011516998.1
	XM_011518697.1			XP_011516999.1
	XM_017014718.1			XP_016870207.1
	AK097419.1			BAC05044.1
	AY604177.1			AAT36740.1
	BC132916.1
	BC132918.1
	HY229093.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	RNF224 TOR4A NDOR1 NELFB ANAPC2 TMEM203 TUBB4B CYSRT1 TPRN RNF208 EXD3 FAM166A SSNA1 NRARP STPG3 SLC34A3 C9orf173-AS1
dgv13011n54	Chr.9:137223996 - 137338927 on Build GRCh38	Loss	TUBB4B CYSRT1 RNF224 TOR4A NELFB EXD3 FAM166A NRARP STPG3 SLC34A3 C9orf173-AS1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	RNF224 NPDC1 LOC101930307 MIR4292 NOXA1 PHPT1 MAMDC4 SSNA1 DPP7 C9orf173-AS1 NDOR1 NSMF C8G ANAPC2 CLIC3 ABCA2 PNPLA7 TUBB4B GRIN1 CCDC183 C9orf139 LCN12 MIR4479 TMEM210 TOR4A C9orf172 ENTPD2 RABL6 SAPCD2 TPRN RNF208 ENTPD8 UAP1L1 FAM166A C9orf142 NRARP LRRC26 SLC34A3 MAN1B1-AS1 PTGDS FBXW5 NELFB TMEM203 MIR3621 MAN1B1 FUT7 LCNL1 CYSRT1 PRR31 EDF1 CCDC183-AS1 EXD3 STPG3 MIR7114 TRAF2
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	TMEM210 RNF224 TOR4A NDOR1 NELFB ANAPC2 TMEM203 MIR3621 TUBB4B CYSRT1 TPRN RNF208 EXD3 GRIN1 FAM166A SSNA1 NRARP STPG3 LRRC26 SLC34A3 C9orf173-AS1
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	TMEM210 RNF224 TOR4A NDOR1 NELFB ANAPC2 TMEM203 MIR3621 TUBB4B CYSRT1 TPRN RNF208 NOXA1 ENTPD8 EXD3 GRIN1 FAM166A SSNA1 NRARP STPG3 LRRC26 SLC34A3 C9orf173-AS1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	RNF224 NPDC1 LOC101930307 LOC100128593 MIR4292 PHPT1 MAMDC4 SSNA1 DPP7 TMEM141 C9orf173-AS1 EGFL7 NDOR1 C8G ANAPC2 AGPAT2 CLIC3 ABCA2 TUBB4B GRIN1 CCDC183 C9orf139 SNORA17B LCN12 MIR4479 TMEM210 TOR4A C9orf172 ENTPD2 MIR126 SNORA17A MIR6722 RABL6 SNHG7 SAPCD2 LCN10 LINC01451 TPRN RNF208 UAP1L1 FAM166A C9orf142 NRARP LRRC26 SLC34A3 MAN1B1-AS1 PTGDS FBXW5 NELFB HSPC324 TMEM203 MIR3621 MAN1B1 FUT7 LCN6 LCN8 LCN15 LCNL1 CYSRT1 PRR31 EDF1 CCDC183-AS1 EXD3 STPG3 FAM69B TRAF2

More Information

Additional Information:

For this assay, SNP(s) [rs146192138] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation