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See other HAGHL CNV Assays ›
Gene Symbol
HAGHL
Assay Reference Genome
Location

Chr.16:728603 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02544968_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 84264

Gene Name:

 hydroxyacylglutathione hydrolase-like

Gene Aliases:

 -

Location:

 Chr.16:726936-729746 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 5 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HAGHL NM_001290137.1 NP_001277066.1
NM_001290139.1 NP_001277068.1
NM_001323635.1 NP_001310564.1
NM_001323636.1 NP_001310565.1
NM_032304.3 NP_115680.1
XM_005255631.4 XP_005255688.1
XM_005255632.1 XP_005255689.1
XM_011522711.1 XP_011521013.1
XM_011522712.1 XP_011521014.1
XM_017023773.1 XP_016879262.1
XM_017023774.1 XP_016879263.1
AA489499.1
AB209331.1 BAD92568.1
AK054841.1 BAB70814.1
AK098340.1 2 1200
AK293575.1
BC004353.1 AAH04353.1
BC015008.1 AAH15008.1
BC033796.1 AAH33796.1
BG469685.1
BG821643.1
BI333301.1
BI834617.1
BQ067068.1
CD050886.1
EL736395.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR4717 FLJ42627 HBA2 MIR3177 BRICD5 MSRB1 SPSB3 PRR25 STUB1 JMJD8 SSTR5-AS1 CACNA1H CCDC78 HS3ST6 MIR6511B1 CAPN15 LOC105371038 HAGHL DECR2 HBA1 PRSS27 C16orf59 LINC00235 RAB40C ATP6V0C HBZ FBXL16 LMF1-AS1 CCNF TPSAB1 METTL26 MLST8 WDR24 UNKL RAB26 WDR90 RNF151 TPSG1 MIR940 ERVK13-1 PKD1 ECI1 C16orf91 IGFALS GNPTG HAGH NHLRC4 AXIN1 RHOT2 LOC729652 MPG SNRNP25 PRSS29P TBL3 SYNGR3 IFT140 FAM173A MIR1225 HBM TSC2 CEMP1 PTX4 KCTD5 SSTR5 LOC107984876 PRR35 C1QTNF8 LMF1 SNORD60 ARHGDIG SNHG19 NARFL NPRL3 MIR6768 MRPL28 RPUSD1 TRAF7 MIR4516 RAB11FIP3 CASKIN1 UBE2I NOXO1 LOC105371045 LOC106660606 TELO2 ABCA3 MIR3677 FAM234A PGP DNASE1L2 TPSD1 LOC107987233 LOC105371049 LOC105371046 WASIR2 CRAMP1 MEIOB CCDC154 RHBDF1 LOC100134368 NDUFB10 RPL23AP5 TMEM8A TMEM204 BAIAP3 NME4 E4F1 HBQ1 MIR3176 NUBP2 ZNF598 MRPS34 SNORA10 RPS2 SNORA64 NPW LOC652276 ABCA17P RHBDL1 TBC1D24 MCRIP2 LINC00254 LOC105371184 MIR5587 GFER CLCN7 POLR3K MSLN MIR3180-5 TPSB2 MIR662 NTN3 PDPK1 WFIKKN1 GNG13 LOC100287175 PIGQ AMDHD2 MIR6767 LOC101929280 LUC7L RNPS1 FAHD1 SLC9A3R2 NTHL1 CHTF18 LOC105371047 EME2 DDX11L10 SNHG9 MIR6859-4 TSR3 RPL3L RGS11 MAPK8IP3 PDIA2 SNORA78 NME3 SOX8 METRN MIR3178 HN1L
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC105371184 WDR90 RPUSD1 MIR5587 RAB11FIP3 MSLN MIR662 PRR25 STUB1 JMJD8 WFIKKN1 GNG13 LOC100287175 PIGQ CCDC78 NHLRC4 LOC107987233 RHOT2 LOC101929280 CAPN15 LOC105371038 HAGHL FAM173A LINC00235 MIR3176 CHTF18 RAB40C FBXL16 PRR35 METTL26 METRN NARFL RHBDL1 MCRIP2 WDR24
nsv457311 Chr.16:681725 - 761746 on Build GRCh38 Loss JMJD8 HAGHL CCDC78 FAM173A MSLN METRN NARFL FBXL16 WDR24 STUB1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC105371184 WDR90 RPUSD1 MIR5587 RAB11FIP3 MSLN MIR662 PRR25 STUB1 JMJD8 WFIKKN1 GNG13 LOC100287175 PIGQ CCDC78 NHLRC4 LOC107987233 RHOT2 LOC101929280 CAPN15 LOC105371038 HAGHL FAM173A LINC00235 MIR3176 CHTF18 RAB40C FBXL16 PRR35 METTL26 METRN NARFL RHBDL1 MCRIP2 WDR24
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC105371184 WDR90 RPUSD1 MIR5587 RAB11FIP3 MSLN MIR662 PRR25 STUB1 JMJD8 SSTR5-AS1 WFIKKN1 GNG13 LOC100287175 PIGQ CCDC78 NHLRC4 LOC107987233 RHOT2 LOC101929280 CAPN15 LOC105371038 HAGHL FAM173A LINC00235 MIR3176 CHTF18 RAB40C FBXL16 SSTR5 LOC107984876 PRR35 C1QTNF8 LMF1-AS1 LMF1 METTL26 SOX8 METRN NARFL RHBDL1 MCRIP2 WDR24
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss LOC101929280 LOC105371184 LOC105371038 WDR90 HAGHL FAM173A RAB40C FBXL16 STUB1 JMJD8 WFIKKN1 LOC100287175 PIGQ CCDC78 METTL26 METRN RHOT2 NARFL RHBDL1 MCRIP2 WDR24
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371184 WDR90 RPUSD1 MSLN MIR662 STUB1 JMJD8 WFIKKN1 GNG13 LOC100287175 PIGQ CCDC78 RHOT2 LOC101929280 LOC105371038 HAGHL FAM173A CHTF18 RAB40C FBXL16 METTL26 METRN NARFL RHBDL1 MCRIP2 WDR24
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC105371184 WDR90 RPUSD1 MIR5587 RAB11FIP3 MSLN MIR662 PRR25 STUB1 JMJD8 WFIKKN1 GNG13 LOC100287175 PIGQ CCDC78 NHLRC4 LOC107987233 RHOT2 LOC101929280 CAPN15 LOC105371038 HAGHL FAM173A LINC00235 MIR3176 CHTF18 RAB40C FBXL16 PRR35 METTL26 METRN NARFL RHBDL1 MCRIP2 WDR24
nsv516590 Chr.16:605686 - 748489 on Build GRCh38 Loss LOC105371184 LOC105371038 WDR90 HAGHL FAM173A RAB40C FBXL16 STUB1 JMJD8 WFIKKN1 LOC100287175 CCDC78 METTL26 METRN RHOT2 NARFL RHBDL1 MCRIP2 WDR24
nsv571022 Chr.16:718334 - 728820 on Build GRCh38 Loss HAGHL CCDC78 FAM173A METRN
nsv471065 Chr.16:629411 - 739761 on Build GRCh38 Gain LOC105371184 LOC105371038 WDR90 HAGHL FAM173A FBXL16 STUB1 JMJD8 WFIKKN1 LOC100287175 CCDC78 METTL26 METRN RHOT2 NARFL RHBDL1 MCRIP2 WDR24
dgv4825n54 Chr.16:661905 - 761746 on Build GRCh38 Loss LOC105371184 WDR90 HAGHL FAM173A MSLN FBXL16 STUB1 JMJD8 CCDC78 METRN RHOT2 NARFL RHBDL1 WDR24
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss LOC105371184 LOC105371038 WDR90 RPUSD1 HAGHL FAM173A MSLN CHTF18 MIR662 FBXL16 STUB1 JMJD8 GNG13 LOC100287175 CCDC78 METRN RHOT2 NARFL RHBDL1 MCRIP2 WDR24

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More Information


Additional Information:

For this assay, SNP(s) [rs200248367] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Process(es)


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