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See other MSLN CNV Assays ›
Gene Symbol
MSLN
Assay Reference Genome
Location

Chr.16:766656 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02552227_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10232

Gene Name:

 mesothelin

Gene Aliases:

 MPF, SMRP

Location:

 Chr.16:760746-768865 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 14 - Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSLN NM_001177355.2 NP_001170826.1
NM_005823.5 NP_005814.2
NM_013404.4 NP_037536.2
XM_005255034.4 XP_005255091.1
XM_011522348.2 XP_011520650.1
XM_017022853.1 XP_016878342.1
XM_017022854.1 XP_016878343.1
XM_017022855.1 XP_016878344.1
XM_017022856.1 XP_016878345.1
XM_017022857.1 XP_016878346.1
XM_017022858.1 XP_016878347.1
AF180951.1 AAF01409.1
AY743922.1 AAV87530.1
BC003512.1 AAH03512.1
BC009272.2 AAH09272.1
CB266931.1
D49441.1 BAA08419.1
U40434.1 AAC50348.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571025 Chr.16:760143 - 768092 on Build GRCh38 Gain MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MIR662 RPUSD1 PRR25 GNG13 MSLN CHTF18
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication CACNA1H LOC105371046 MIR5587 LOC106660606 DECR2 ERVK13-1 MIR3176 PRSS27 LMF1 PTX4 MIR662 MIR4717 PRSS29P BAIAP3 ZNF598 GNG13 UBE2I METRN JMJD8 EME2 TMEM204 CRAMP1 CASKIN1 CAPN15 SNRNP25 DNASE1L2 LOC105371184 RPL23AP5 LOC100287175 STUB1 MIR3177 SOX8 TSR3 NME4 CEMP1 LOC101929280 RGS11 FAM234A MRPS34 MIR6767 RNF151 RAB26 UNKL HBA2 FBXL16 HAGH SNHG19 CHTF18 NPRL3 SNHG9 RPUSD1 SPSB3 CCNF ECI1 LOC652276 AXIN1 TSC2 LOC105371038 PDIA2 LINC00235 WASIR2 NOXO1 PDPK1 MEIOB PKD1 TBC1D24 MSRB1 FLJ42627 BRICD5 TPSAB1 NARFL GFER SNORA64 CLCN7 TPSB2 HBZ MIR1225 LOC107987233 HAGHL SLC9A3R2 MAPK8IP3 RPS2 RNPS1 LOC105371047 FAHD1 NHLRC4 HBQ1 MIR3677 HN1L LOC107984876 CCDC78 RPL3L SNORA10 PGP TPSG1 IGFALS SYNGR3 MCRIP2 SNORA78 MRPL28 LOC100134368 RHBDF1 MLST8 NTHL1 HBA1 RHBDL1 C16orf91 SNORD60 METTL26 LMF1-AS1 ABCA17P NPW POLR3K HBM MIR4516 KCTD5 TBL3 LOC105371049 MIR3180-5 MIR940 WDR24 PIGQ MIR6511B1 NME3 RAB40C SSTR5-AS1 NTN3 TPSD1 C1QTNF8 HS3ST6 CCDC154 NUBP2 C16orf59 FAM173A PRR25 NDUFB10 MPG ATP6V0C ABCA3 TELO2 MIR6768 TMEM8A RHOT2 LOC729652 RAB11FIP3 SSTR5 MIR6859-4 MSLN LUC7L IFT140 LOC105371045 GNPTG E4F1 WFIKKN1 LINC00254 ARHGDIG DDX11L10 AMDHD2 MIR3178 PRR35 TRAF7 WDR90
nsv1702 Chr.16:751088 - 784288 on Build GRCh38 Insertion MIR662 MSLN
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC101929280 FAM173A NHLRC4 MIR5587 PRR25 CCDC78 MIR3176 FBXL16 CHTF18 MIR662 RPUSD1 MCRIP2 RHOT2 RAB11FIP3 GNG13 MSLN RHBDL1 LOC105371038 METRN LINC00235 JMJD8 METTL26 CAPN15 LOC105371184 NARFL LOC100287175 WDR24 STUB1 PIGQ WFIKKN1 RAB40C LOC107987233 HAGHL PRR35 WDR90
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC101929280 FAM173A NHLRC4 MIR5587 PRR25 CCDC78 MIR3176 FBXL16 CHTF18 MIR662 RPUSD1 MCRIP2 RHOT2 RAB11FIP3 GNG13 MSLN RHBDL1 LOC105371038 METRN LINC00235 JMJD8 METTL26 CAPN15 LOC105371184 NARFL LOC100287175 WDR24 STUB1 PIGQ WFIKKN1 RAB40C LOC107987233 HAGHL PRR35 WDR90
nsv571023 Chr.16:750821 - 781496 on Build GRCh38 Loss MIR662 MSLN
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion LOC101929280 FAM173A NHLRC4 MIR5587 PRR25 LOC107984876 CCDC78 MIR3176 FBXL16 LMF1 CHTF18 MIR662 RPUSD1 MCRIP2 RHOT2 RAB11FIP3 SSTR5 GNG13 MSLN RHBDL1 LOC105371038 METRN LINC00235 JMJD8 METTL26 CAPN15 LMF1-AS1 LOC105371184 NARFL LOC100287175 WDR24 STUB1 PIGQ WFIKKN1 SOX8 RAB40C SSTR5-AS1 LOC107987233 C1QTNF8 HAGHL PRR35 WDR90
nsv571030 Chr.16:766072 - 768092 on Build GRCh38 Gain MSLN
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC101929280 FAM173A CCDC78 FBXL16 CHTF18 MIR662 RPUSD1 MCRIP2 RHOT2 GNG13 MSLN RHBDL1 LOC105371038 METRN JMJD8 METTL26 LOC105371184 NARFL LOC100287175 WDR24 STUB1 PIGQ WFIKKN1 RAB40C HAGHL WDR90
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC101929280 FAM173A NHLRC4 MIR5587 PRR25 CCDC78 MIR3176 FBXL16 CHTF18 MIR662 RPUSD1 MCRIP2 RHOT2 RAB11FIP3 GNG13 MSLN RHBDL1 LOC105371038 METRN LINC00235 JMJD8 METTL26 CAPN15 LOC105371184 NARFL LOC100287175 WDR24 STUB1 PIGQ WFIKKN1 RAB40C LOC107987233 HAGHL PRR35 WDR90
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss LOC105371038 METRN JMJD8 FAM173A LOC105371184 CCDC78 FBXL16 NARFL CHTF18 LOC100287175 WDR24 STUB1 MIR662 RPUSD1 MCRIP2 RHOT2 HAGHL GNG13 WDR90 MSLN RHBDL1
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss MIR662 RPUSD1 PRR25 GNG13 MSLN CHTF18
dgv772e212 Chr.16:749297 - 780622 on Build GRCh38 Loss MIR662 MSLN

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cell adhesion molecule

Gene Ontology Categories:

Function(s) Process(es)


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