Hs02560787_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136402911 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Overlaps Intron 9 - Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1			XP_016869707.1
	XM_017014219.1			XP_016869708.1
	AF039688.1			AAC18037.1
	AK001296.1			BAA91607.1
	AY129014.1			AAM98757.1
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	SDCCAG3 PMPCA
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	INPP5E SDCCAG3 PMPCA SNAPC4 CARD9 SEC16A
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	INPP5E SDCCAG3 DNLZ PMPCA SNAPC4 CARD9 SEC16A GPSM1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR4674 UAP1L1 AGPAT2 INPP5E EGFL7 SNAPC4 LOC101930307 MAMDC4 PHPT1 EDF1 LOC100128593 C8G LCNL1 C9orf172 CLIC3 LCN15 CCDC183-AS1 MAN1B1 ENTPD2 RABL6 SNORA17A MIR126 FAM69B FUT7 DNLZ MIR4673 LCN10 FBXW5 NALT1 LCN12 GRIN1 SNHG7 PTGDS LINC01451 LCN6 CARD9 SEC16A MIR4292 DPP7 HSPC324 LRRC26 SNORA17B SAPCD2 PMPCA TMEM210 MIR4479 NPDC1 NOTCH1 C9orf163 TMEM141 CCDC183 MIR6722 C9orf142 C9orf139 SDCCAG3 MIR3621 PRR31 MAN1B1-AS1 ABCA2 TRAF2 LCN8
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	LCN6 MIR4674 AGPAT2 INPP5E EGFL7 SNAPC4 CARD9 SEC16A MIR4292 MAMDC4 PHPT1 EDF1 LOC100128593 HSPC324 SNORA17B C9orf172 PMPCA MIR4479 LCN15 GPSM1 CCDC183-AS1 RABL6 SNORA17A MIR126 NOTCH1 C9orf163 TMEM141 CCDC183 MIR6722 FAM69B SDCCAG3 DNLZ MIR4673 LCN10 NALT1 SNHG7 TRAF2 LCN8 LINC01451
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	ESP33 NOTCH1 C9orf163 INPP5E LOC101928722 SDCCAG3 DNLZ LHX3 SNAPC4 LOC105376323 CARD9 UBAC1 SEC16A QSOX2 CAMSAP1 NACC2 DKFZP434A062 LOC107987142 PMPCA CCDC187 GPSM1 C9orf69
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	INPP5E SDCCAG3 PMPCA SNAPC4 SEC16A
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	ESP33 MIR4674 INPP5E SNAPC4 CARD9 UBAC1 SEC16A QSOX2 DKFZP434A062 KCNT1 PMPCA GPSM1 NOTCH1 C9orf163 LOC101928722 SDCCAG3 DNLZ MIR4673 LHX3 LOC105376323 CAMSAP1 NACC2 NALT1 LOC107987142 CCDC187 C9orf69

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding