Hs02562757_cn

• Gene Symbol: GATS
• Assay Reference Genome Location: Chr.7:100211440 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 352954
• Gene Name: GATS, stromal antigen 3 opposite strand
• Gene Aliases: STAG3OS
• Location: Chr.7:100187988-100272274 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GATS	NM_178831.6			NP_849153.3
	NR_028038.1	7	1555
	NR_028039.1	7	1555
	NR_028040.1
	XM_017012153.1	5	2398	XP_016867642.1
	XM_017012154.1			XP_016867643.1
	XM_017012155.1			XP_016867644.1
	XM_017012156.1			XP_016867645.1
	XM_017012157.1			XP_016867646.1
	AK056608.1
	AK091418.1	5	720
	AK092358.1	7	1313	BAC03870.1
	AK095056.1
	AK124689.1	1	1806
	AK290510.1
	AL831967.2	1	1930
	BC033723.1			AAH33723.1
	BC065200.1			AAH65200.1
	BC090867.1	7	1530	AAH90867.1
	CR749506.1			CAH18327.1
	DA737015.1

Target Gene Details

• Entrez Gene ID: 10734
• Gene Name: stromal antigen 3
• Gene Aliases: -
• Location: Chr.7:100177563-100219334 on Build GRCh38
• Assay Gene Location: Overlaps Intron 30 - Exon 31

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
STAG3	NM_001282716.1			NP_001269645.1
	NM_001282717.1			NP_001269646.1
	NM_001282718.1			NP_001269647.1
	NM_012447.3			NP_036579.2
	XM_011515742.1			XP_011514044.1
	XM_017011683.1			XP_016867172.1
	XM_017011684.1			XP_016867173.1
	XM_017011685.1			XP_016867174.1
	XM_017011686.1			XP_016867175.1
	XM_017011687.1			XP_016867176.1
	AJ007798.2			CAB59367.1
	AK292394.1
	AK302587.1
	AK302693.1
	AL833816.1			CAD38679.2
	BC140932.1
	BC146806.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2734888	Chr.7:99975623 - 101290285 on Build GRCh38	Deletion	MIR106B EPO GATS PILRB TSC22D4 MEPCE VGF TRIM56 MUC12 PCOLCE PCOLCE-AS1 MIR6875 PVRIG2P CLDN15 MUC3A MCM7 MIR4653 AZGP1P1 ZCWPW1 GIGYF1 FIS1 ZSCAN21 AGFG2 LRCH4 SAP25 SERPINE1 MIR6840 MIR4658 NYAP1 AP4M1 PLOD3 C7orf61 MUC17 SRRT NAT16 SLC12A9 TRIP6 PVRIG TAF6 AP1S1 LOC105375429 MIR93 STAG3L5P ZNHIT1 C7orf43 ZAN UFSP1 COPS6 AZGP1 GAL3ST4 PMS2P1 STAG3L5P-PVRIG2P-PILRB PILRA LAMTOR4 PPP1R35 POP7 TFR2 GNB2 MBLAC1 FBXO24 LOC102724094 ZNF3 GPC2 ACHE MIR25 ZKSCAN1 ZASP MOGAT3 EPHB4 CNPY4 STAG3 MOSPD3 SPDYE3 ACTL6B
nsv428180	Chr.7:100153358 - 100363277 on Build GRCh38	Gain	STAG3L5P GATS C7orf43 PILRB GAL3ST4 PMS2P1 MIR6840 STAG3L5P-PVRIG2P-PILRB PVRIG2P MIR4658 LAMTOR4 STAG3 SPDYE3 PVRIG GPC2
nsv8182	Chr.7:100202193 - 100282158 on Build GRCh38	Gain	STAG3 GATS PVRIG

More Information

Additional Information:

For this assay, SNP(s) [rs80044214] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

synaptonemal complex assembly