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See other HLA-E CNV Assays ›
Gene Symbol
HLA-E
Assay Reference Genome
Location

Chr.6:30490190 on build GRCh38
Cytoband
6p22.1
Assay ID Hs02603584_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3133

Gene Name:

 major histocompatibility complex, class I, E

Gene Aliases:

 EA1.2, EA2.1, HLA-6.2, MHC, QA1

Location:

 Chr.6:30489406-30494205 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-E NM_005516.5 NP_005507.3
XM_017010807.1 XP_016866296.1
XM_017010808.1 XP_016866297.1
XM_017010809.1 XP_016866298.1
AB209870.1 BAD93107.1
AJ293263.1 CAC07212.1
AJ293264.1 CAC07213.1
AK098434.1
AK225048.1
AK292391.1
AK296822.1
AK298695.1
AK300906.1
AK301125.1
AK314411.1
AK316327.1
AY216681.1 AAO37688.1
AY221103.1 AAO34408.1
BC002578.2 AAH02578.1
BC004297.1 AAH04297.1
BC040479.1 AAH40479.1
BM791769.1
BX538084.1 CAD98008.1
DA832616.1
L78455.1
L78934.1
M20022.1 AAA52655.1
M31183.1 AAA57146.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion MDC1-AS1 HCG17 OR11A1 HLA-H TRIM31 HCG20 GTF2H4 SNORD32B HLA-L VARS2 OR2H2 MRPS18B MAS1L GABBR1 PRR3 UBD C6orf136 MICA PSORS1C1 ZFP57 OR2J2 HCG9 POU5F1 IER3 HLA-A HLA-B TUBB HLA-F-AS1 OR14J1 CCHCR1 PPP1R10 HLA-E TRIM39-RPP21 OR12D3 HLA-F MIR6891 MIR4640 CDSN HLA-G DDR1 DHX16 RNF39 HCG4 LOC105375014 ZNRD1ASP C6orf15 SFTA2 RPP21 MDC1 IFITM4P ZNRD1 TRIM39 LINC00243 HCG27 OR12D2 MUC22 HCG18 PSORS1C3 TRIM26 LOC101929006 TRIM15 PPP1R11 HLA-J LINC01015 HCG22 MIR877 MOG OR10C1 HCG8 ATAT1 NRM OR2H1 TCF19 TRIM10 FLOT1 HLA-C MUC21 ABCF1 HCG4B TRIM40 GNL1 TRIM31-AS1 PSORS1C2 DPCR1 OR5V1 LOC554223 PPP1R18 HLA-K
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss MDC1-AS1 C6orf15 SFTA2 MDC1 HCG20 GTF2H4 VARS2 MRPS18B LINC00243 PRR3 HCG27 MUC22 C6orf136 PSORS1C1 PSORS1C3 POU5F1 IER3 HCG22 TUBB MIR877 CCHCR1 PPP1R10 HLA-E ATAT1 NRM MIR4640 TCF19 CDSN DDR1 FLOT1 HLA-C MUC21 DHX16 ABCF1 GNL1 PSORS1C2 LOC105375014 DPCR1 PPP1R18
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion MDC1-AS1 HCG17 OR11A1 HLA-H TRIM31 HCG20 GTF2H4 SNORD32B HLA-L VARS2 OR2H2 MRPS18B LINC00533 MAS1L GABBR1 PRR3 UBD C6orf136 PSORS1C1 ZFP57 OR2J2 HCG9 POU5F1 OR2B3 IER3 HLA-A TUBB HLA-F-AS1 OR14J1 CCHCR1 PPP1R10 HLA-E TRIM39-RPP21 OR2W1 OR12D3 HCG14 HLA-F MIR4640 CDSN HLA-G DDR1 TRIM27 DHX16 RNF39 HCG4 LOC105375014 ZNRD1ASP C6orf15 SFTA2 RPP21 MDC1 IFITM4P ZNRD1 LINC01556 TRIM39 LINC00243 LINC01623 HCG27 OR12D2 MUC22 HCG18 PSORS1C3 TRIM26 LOC101929006 TRIM15 PPP1R11 HLA-J LINC01015 HCG22 MIR877 MOG OR10C1 HCG16 HCG8 ATAT1 ZNF311 LOC100129636 NRM OR2H1 TCF19 TRIM10 FLOT1 MUC21 ABCF1 HCG4B TRIM40 GNL1 TRIM31-AS1 PSORS1C2 DPCR1 OR2J3 OR5V1 LOC554223 PPP1R18 HLA-K
nsv970103 Chr.6:30484678 - 30492295 on Build GRCh38 Duplication HLA-E
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion MDC1-AS1 HCG17 HLA-H TRIM31 HCG20 GTF2H4 HLA-L VARS2 MRPS18B PRR3 C6orf136 PSORS1C1 HCG9 POU5F1 IER3 HLA-A TUBB HLA-F-AS1 CCHCR1 PPP1R10 HLA-E TRIM39-RPP21 HLA-F MIR4640 CDSN HLA-G DDR1 DHX16 RNF39 HCG4 LOC105375014 ZNRD1ASP C6orf15 SFTA2 RPP21 MDC1 IFITM4P ZNRD1 TRIM39 LINC00243 HCG27 MUC22 HCG18 PSORS1C3 TRIM26 TRIM15 PPP1R11 HLA-J HCG22 MIR877 HCG8 ATAT1 NRM TCF19 TRIM10 FLOT1 HLA-C MUC21 ABCF1 HCG4B TRIM40 GNL1 TRIM31-AS1 PSORS1C2 DPCR1 LOC554223 PPP1R18 HLA-K
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion MDC1-AS1 C6orf15 SFTA2 MDC1 HCG20 GTF2H4 VARS2 MRPS18B LINC00243 PRR3 HCG27 MUC22 C6orf136 PSORS1C1 PSORS1C3 POU5F1 IER3 HCG22 TUBB MIR877 CCHCR1 PPP1R10 HLA-E ATAT1 NRM MIR4640 TCF19 CDSN DDR1 FLOT1 HLA-C MUC21 DHX16 ABCF1 GNL1 PSORS1C2 LOC105375014 DPCR1 PPP1R18
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss MDC1-AS1 HCG17 HLA-H TRIM31 HCG20 GTF2H4 HLA-L VARS2 MRPS18B PRR3 C6orf136 PSORS1C1 HCG9 POU5F1 IER3 HLA-A TUBB CCHCR1 PPP1R10 HLA-E TRIM39-RPP21 MIR4640 CDSN DDR1 DHX16 RNF39 LOC105375014 ZNRD1ASP C6orf15 SFTA2 RPP21 MDC1 ZNRD1 TRIM39 LINC00243 HCG27 MUC22 HCG18 PSORS1C3 TRIM26 TRIM15 PPP1R11 HLA-J HCG22 MIR877 HCG8 ATAT1 NRM TCF19 TRIM10 FLOT1 HLA-C MUC21 ABCF1 HCG4B TRIM40 GNL1 TRIM31-AS1 PSORS1C2 DPCR1 PPP1R18 HLA-K
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication MDC1-AS1 HCG17 TRIM31 HCG20 GTF2H4 HLA-L VARS2 MRPS18B PRR3 C6orf136 MICA PSORS1C1 POU5F1 IER3 HLA-B TUBB CCHCR1 PPP1R10 HLA-E TRIM39-RPP21 MIR6891 MIR4640 CDSN DDR1 DHX16 RNF39 LOC105375014 ZNRD1ASP C6orf15 HCG26 SFTA2 RPP21 MDC1 ZNRD1 TRIM39 LINC00243 HCG27 MUC22 HCG18 PSORS1C3 TRIM26 TRIM15 PPP1R11 HLA-J HCG22 MIR877 HCG8 HCP5 ATAT1 NRM TCF19 TRIM10 LOC102725068 FLOT1 HLA-C MUC21 ABCF1 TRIM40 GNL1 TRIM31-AS1 PSORS1C2 DPCR1 PPP1R18

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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