Hs02606639_cn

• Gene Symbol: SNAI3
• Assay Reference Genome Location: Chr.16:88681226 on build GRCh38
• Cytoband: 16q24.2

Target Gene Details

• Entrez Gene ID: 333929
• Gene Name: snail family transcriptional repressor 3
• Gene Aliases: SMUC, SNAIL3, ZNF293, Zfp293
• Location: Chr.16:88677682-88686474 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3	NM_178310.3	2	633	NP_840101.1
	BC041461.1	2	540	AAH41461.1
	BC107058.2	2	633	AAI07059.1

Target Gene Details

• Entrez Gene ID: 197187
• Gene Name: SNAI3 antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:88663373-88687186 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNAI3-AS1	NR_024399.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	CTU2 PIEZO1 CYBA LOC100289580 MVD MIR4722 RNF166 LOC339059 SNAI3 SNAI3-AS1
nsv1065973	Chr.16:88661146 - 88731220 on Build GRCh38	Loss	CTU2 PIEZO1 LOC100289580 MVD MIR4722 RNF166 SNAI3 SNAI3-AS1
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	CTU2 PIEZO1 LOC100289580 MIR4722 RNF166 LOC339059 SNAI3 SNAI3-AS1
nsv833325	Chr.16:88553738 - 88698194 on Build GRCh38	Loss	ZC3H18-AS1 IL17C CYBA MVD RNF166 SNAI3 SNAI3-AS1 ZC3H18
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	ZC3H18-AS1 PIEZO1 CYBA LOC100289580 MVD MIR4722 RNF166 MIR5189 ZFPM1 ZNF469 SNAI3 SNAI3-AS1 CTU2 IL17C LOC107984862 LOC339059 ZC3H18
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	PIEZO1 AFG3L1P LOC100289580 ACSF3 LOC107987238 ZNF276 DBNDD1 LOC400558 CDH15 SNAI3-AS1 ANKRD11 TRAPPC2L LOC105371414 LOC107984817 FAM157C GAS8-AS1 SLC22A31 MVD GAS8 SPATA33 DEF8 SPIRE2 SNAI3 LOC105371409 FANCA CTU2 CDK10 PRDM7 LINC00304 URAHP CPNE7 LOC100129697 TCF25 APRT MIR4722 CENPBD1 RPL13 LOC101927793 IL17C TUBB8P7 CBFA2T3 ZNF778 VPS9D1 SPG7 CYBA CDT1 SNORD68 TUBB3 CHMP1A GALNS LOC105371419 RNF166 LOC100287036 SPATA2L LOC101927817 MC1R DPEP1 LOC339059 VPS9D1-AS1 PABPN1L
nsv819188	Chr.16:88672556 - 88694874 on Build GRCh38	Gain	SNAI3 SNAI3-AS1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
copper ion binding