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See other CACFD1 CNV Assays ›
Gene Symbol
CACFD1
Assay Reference Genome
Location

Chr.9:133469807 on build GRCh38
Cytoband
9q34.2
Assay ID Hs02624042_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 11094

Gene Name:

 calcium channel flower domain containing 1

Gene Aliases:

 C9orf7, D9S2135, FLOWER

Location:

 Chr.9:133459965-133470787 on Build GRCh38

Assay Gene Location:

 Within Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CACFD1 NM_001135775.2 4 1649 NP_001129247.1
NM_001242369.1 6 1900 NP_001229298.1
NM_001242370.1 5 1774 NP_001229299.1
NM_017586.3 5 1775 NP_060056.1
XM_011518181.2 6 3457 XP_011516483.1
XM_011518182.1 6 1953 XP_011516484.1
XM_011518184.1 5 2516 XP_011516486.1
XM_011518185.2 5 3332 XP_011516487.1
XM_011518186.1 5 1828 XP_011516488.1
AJ011373.1 5 1731 CAB66156.1
AK074852.1 5 1753 BAC11245.1
AK075416.1 4 1647 BAC11606.1
AK075548.1 5 1743 BAC11691.1
AL137319.1 1 320
AY358452.1 5 1723 AAQ88817.1
BC030558.1 5 1741 AAH30558.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2739138 Chr.9:132727483 - 135521553 on Build GRCh38 Deletion GTF3C5 MIR3689F LOC100996574 OLFM1 SNORD36C OBP2B FAM163B FCN1 MIR6877 SLC2A6 SURF4 MIR3689D2 C9orf62 RXRA SNORD141A WDR5 LOC101928193 ADAMTSL2 MIR3689D1 C9orf116 RALGDS CEL LOC100130548 ADAMTS13 COL5A1 GFI1B VAV2 TSC1 SARDH REXO4 RNU6ATAC MIR3689A LOC101448202 COL5A1-AS1 MRPS2 PPP1R26 PPP1R26-AS1 SNORD24 MIR548AW RPL7A GBGT1 ABO CACFD1 SNORD36B AK8 LOC401557 TMEM8C MED22 MIR3689E DBH-AS1 CELP SPACA9 STKLD1 SNORD36A SURF1 LOC105376306 LINC00094 BRD3 MIR4669 MIR3689B FCN2 LOC101928525 LCN1 MIR3689C SURF6 SURF2 DBH

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More Information


Additional Information:

For this assay, SNP(s) [rs71503201] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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