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See other JMJD8 CNV Assays ›
Gene Symbol
JMJD8
Assay Reference Genome
Location

Chr.16:682501 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02670108_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 339123

Gene Name:

 jumonji domain containing 8

Gene Aliases:

 C16orf20, PP14397

Location:

 Chr.16:681666-684446 on Build GRCh38

Assay Gene Location:

 Within Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
JMJD8 NM_001005920.2 9 1208 NP_001005920.2
NM_001323918.1 9 1210 NP_001310847.1
NM_001323919.1 8 1080 NP_001310848.1
NM_001323920.1 8 1125 NP_001310849.1
NM_001323922.1 8 1120 NP_001310851.1
NR_136650.1 8 1298
NR_136651.1 8 1303
NR_136652.1 7 1213
AF370420.1 9 1092 AAQ15256.1
BC073785.1 8 1180 AAH73785.1
BC094850.1 6 826 AAH94850.1
BC137100.1 9 1174
BC137101.1 9 1174
BG284477.1 4 665
BG423721.1 5 720
BX335015.2

Target Gene Details

Entrez Gene ID:

 10273

Gene Name:

 STIP1 homology and U-box containing protein 1

Gene Aliases:

 CHIP, HSPABP2, NY-CO-7, SCAR16, SDCCAG7, UBOX1

Location:

 Chr.16:680111-682768 on Build GRCh38

Assay Gene Location:

 Within Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
STUB1 NM_001293197.1 7 1428 NP_001280126.1
NM_005861.3 7 1339 NP_005852.2
AF039689.1 7 980 AAC18038.1
AF129085.1 7 1020 AAD33400.1
AF217968.1 7 1315 AAG17211.1
AF432221.1 7 1035 AAL99927.1
BC007545.1 7 1023 AAH07545.1
BC017178.1 7 1010 AAH17178.1
BC022788.1 7 1023 AAH22788.1
BC063617.1 7 954 AAH63617.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv827480 Chr.16:672775 - 685288 on Build GRCh38 Gain RHBDL1 LOC105371184 RHOT2 JMJD8 WDR24 STUB1
nsv482182 Chr.16:681667 - 684439 on Build GRCh38 Gain JMJD8 STUB1
nsv482181 Chr.16:680115 - 682767 on Build GRCh38 Gain JMJD8 STUB1
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NHLRC4 RNPS1 RHBDF1 AMDHD2 CCDC78 CHTF18 NME3 RNF151 MIR6511B1 LUC7L TMEM204 NME4 ABCA17P PDIA2 SSTR5 JMJD8 PIGQ UBE2I HBQ1 MSRB1 MIR1225 MAPK8IP3 RAB26 NOXO1 MIR3677 PKD1 HBA1 HN1L LOC106660606 MIR662 CCNF RHOT2 LOC100287175 LOC729652 DNASE1L2 MIR3180-5 MPG PRR25 SOX8 RPL3L HBA2 RAB40C ECI1 SPSB3 RGS11 MIR6767 RPL23AP5 CRAMP1 NTN3 MIR5587 FBXL16 TBC1D24 CAPN15 DECR2 LOC107984876 ARHGDIG MIR3177 WASIR2 MRPS34 RPUSD1 HAGH ERVK13-1 E4F1 ZNF598 FAM234A NTHL1 RHBDL1 NDUFB10 LOC105371046 FAM173A PRSS29P MIR4717 LOC107987233 TBL3 RAB11FIP3 AXIN1 SNHG19 WDR90 DDX11L10 PRR35 MEIOB TPSD1 GNG13 CCDC154 NUBP2 TELO2 METRN HBM SYNGR3 MIR4516 LOC100134368 ATP6V0C POLR3K SLC9A3R2 PGP PDPK1 MLST8 IFT140 NARFL KCTD5 HBZ UNKL C16orf59 TSC2 RPS2 SNHG9 IGFALS WDR24 LOC105371045 TMEM8A CASKIN1 NPW FLJ42627 HAGHL CACNA1H MIR3176 MCRIP2 MRPL28 CLCN7 C16orf91 SNORA78 MIR3178 LINC00254 METTL26 LOC101929280 TSR3 LMF1 LOC105371038 SNORA10 SNORD60 MIR6768 NPRL3 WFIKKN1 GNPTG TRAF7 C1QTNF8 CEMP1 FAHD1 SSTR5-AS1 LINC00235 SNORA64 BAIAP3 ABCA3 PRSS27 MSLN EME2 STUB1 TPSAB1 GFER LMF1-AS1 PTX4 LOC105371184 LOC105371047 LOC652276 TPSB2 LOC105371049 SNRNP25 MIR6859-4 MIR940 TPSG1 HS3ST6 BRICD5
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss WDR90 PRR25 NHLRC4 PRR35 RAB40C GNG13 CCDC78 METTL26 METRN CHTF18 LOC101929280 LOC105371038 MIR5587 FBXL16 CAPN15 JMJD8 PIGQ NARFL WFIKKN1 RPUSD1 LINC00235 MSLN MIR662 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FAM173A HAGHL LOC107987233 MIR3176 MCRIP2 RAB11FIP3
nsv457311 Chr.16:681725 - 761746 on Build GRCh38 Loss FBXL16 CCDC78 FAM173A JMJD8 METRN HAGHL NARFL MSLN WDR24 STUB1
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss WDR90 PRR25 NHLRC4 PRR35 RAB40C GNG13 CCDC78 METTL26 METRN CHTF18 LOC101929280 LOC105371038 MIR5587 FBXL16 CAPN15 JMJD8 PIGQ NARFL WFIKKN1 RPUSD1 LINC00235 MSLN MIR662 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FAM173A HAGHL LOC107987233 MIR3176 MCRIP2 RAB11FIP3
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion WDR90 PRR25 NHLRC4 PRR35 SOX8 RAB40C GNG13 CCDC78 METTL26 METRN CHTF18 LOC101929280 LMF1 LOC105371038 MIR5587 SSTR5 FBXL16 CAPN15 JMJD8 LOC107984876 PIGQ NARFL WFIKKN1 C1QTNF8 RPUSD1 SSTR5-AS1 LINC00235 MSLN MIR662 WDR24 STUB1 LMF1-AS1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FAM173A HAGHL LOC107987233 MIR3176 MCRIP2 RAB11FIP3
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss WFIKKN1 WDR90 RAB40C CCDC78 METTL26 METRN LOC101929280 LOC105371038 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FBXL16 FAM173A JMJD8 PIGQ HAGHL NARFL MCRIP2
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication WDR90 RAB40C GNG13 CCDC78 METTL26 METRN CHTF18 LOC101929280 LOC105371038 FBXL16 JMJD8 PIGQ NARFL WFIKKN1 RPUSD1 MSLN MIR662 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FAM173A HAGHL MCRIP2
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication WDR90 PRR25 NHLRC4 PRR35 RAB40C GNG13 CCDC78 METTL26 METRN CHTF18 LOC101929280 LOC105371038 MIR5587 FBXL16 CAPN15 JMJD8 PIGQ NARFL WFIKKN1 RPUSD1 LINC00235 MSLN MIR662 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FAM173A HAGHL LOC107987233 MIR3176 MCRIP2 RAB11FIP3
nsv516590 Chr.16:605686 - 748489 on Build GRCh38 Loss WFIKKN1 WDR90 RAB40C CCDC78 METTL26 METRN LOC105371038 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FBXL16 FAM173A JMJD8 HAGHL NARFL MCRIP2
nsv471065 Chr.16:629411 - 739761 on Build GRCh38 Gain WFIKKN1 WDR90 CCDC78 METTL26 METRN LOC105371038 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FBXL16 FAM173A JMJD8 HAGHL NARFL MCRIP2
dgv4825n54 Chr.16:661905 - 761746 on Build GRCh38 Loss WDR90 CCDC78 METRN MSLN WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 FBXL16 FAM173A JMJD8 HAGHL NARFL
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss WDR90 RPUSD1 GNG13 CCDC78 METRN CHTF18 MSLN LOC105371038 MIR662 WDR24 STUB1 RHBDL1 LOC105371184 RHOT2 LOC100287175 FBXL16 FAM173A JMJD8 HAGHL NARFL MCRIP2

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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