Hs02720149_cn

• Gene Symbol: TAF1D
• Assay Reference Genome Location: Chr.11:93736105 on build GRCh38
• Cytoband: 11q21

Target Gene Details

• Entrez Gene ID: 79101
• Gene Name: TATA-box binding protein associated factor, RNA polymerase I subunit D
• Gene Aliases: JOSD3, RAFI41, TAF(I)41, TAFI41
• Location: Chr.11:93735929-93741537 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TAF1D	NM_024116.3	6	1136	NP_077021.1
	AK027016.1			BAB15628.1
	BQ774057.1	1	188

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv832232	Chr.11:93668148 - 93816272 on Build GRCh38	Gain	SNORA32 CEP295 MIR1304 SNORA1 C11orf54 SNORA25 TAF1D SNORA8 SNORA40 SNORA18 SCARNA9 MED17 SNORD6 SNORD5
esv3627294	Chr.11:93485306 - 93944317 on Build GRCh38	Gain	SNORA32 CEP295 MIR1304 SNORA1 SMCO4 C11orf54 SNORA25 TAF1D SNORA8 SNORA40 SNORA18 SCARNA9 MED17 SNORD6 VSTM5 SNORD5

More Information

Additional Information:

For this assay, SNP(s) [rs138069553] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

DNA-directed RNA polymerase, RNA metabolism protein, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
transcription initiation from RNA polymerase I promoter
transcription elongation from RNA polymerase I promoter
termination of RNA polymerase I transcription
positive regulation of gene expression, epigenetic

Function(s)

DNA binding
protein binding