Hs02721485_cn

• Gene Symbol: SDCCAG3
• Assay Reference Genome Location: Chr.9:136404026 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10807
• Gene Name: serologically defined colon cancer antigen 3
• Gene Aliases: NY-CO-3
• Location: Chr.9:136401922-136410602 on Build GRCh38
• Assay Gene Location: Overlaps Intron 9 - Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SDCCAG3	NM_001039707.1			NP_001034796.1
	NM_001039708.1			NP_001034797.1
	NM_006643.3			NP_006634.3
	XM_005266050.3			XP_005266107.1
	XM_005266051.3			XP_005266108.1
	XM_011518157.2			XP_011516459.1
	XM_017014218.1			XP_016869707.1
	XM_017014219.1			XP_016869708.1
	AF039688.1			AAC18037.1
	AK001296.1			BAA91607.1
	AY129014.1			AAM98757.1
	AY349357.1			AAQ56721.1
	BC014515.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2739359	Chr.9:136403093 - 136404131 on Build GRCh38	Deletion	SDCCAG3
nsv825174	Chr.9:136401929 - 136413005 on Build GRCh38	Gain	PMPCA SDCCAG3
nsv831760	Chr.9:136366430 - 136480358 on Build GRCh38	Loss	INPP5E CARD9 SNAPC4 PMPCA SDCCAG3 SEC16A
nsv509333	Chr.9:136346749 - 136440541 on Build GRCh38	Insertion	INPP5E CARD9 SNAPC4 GPSM1 PMPCA SDCCAG3 DNLZ SEC16A
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MIR4292 FBXW5 C9orf172 NPDC1 SAPCD2 LCN12 MAN1B1-AS1 LCN15 TMEM210 PHPT1 MIR4673 ENTPD2 LCN10 DNLZ GRIN1 MIR3621 SEC16A NALT1 FAM69B LRRC26 LOC101930307 PTGDS INPP5E C9orf163 PMPCA MAN1B1 LOC100128593 CLIC3 EGFL7 FUT7 LINC01451 PRR31 MIR4479 C9orf142 AGPAT2 DPP7 MAMDC4 C9orf139 HSPC324 LCNL1 CCDC183 C8G CARD9 RABL6 LCN6 MIR4674 NOTCH1 SNORA17A ABCA2 CCDC183-AS1 LCN8 TMEM141 SDCCAG3 SNORA17B MIR126 TRAF2 SNAPC4 SNHG7 UAP1L1 EDF1 MIR6722
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR4292 C9orf172 MAMDC4 LCN15 HSPC324 CCDC183 CARD9 RABL6 LCN6 PHPT1 MIR4673 MIR4674 LCN10 DNLZ NOTCH1 SNORA17A SEC16A NALT1 FAM69B CCDC183-AS1 LCN8 INPP5E TMEM141 C9orf163 PMPCA SDCCAG3 LOC100128593 SNORA17B MIR126 EGFL7 LINC01451 TRAF2 SNAPC4 SNHG7 GPSM1 MIR4479 EDF1 MIR6722 AGPAT2
nsv825173	Chr.9:135892081 - 136495763 on Build GRCh38	Gain	LOC107987142 NACC2 INPP5E C9orf69 C9orf163 LOC105376323 PMPCA SDCCAG3 CAMSAP1 DKFZP434A062 LHX3 UBAC1 LOC101928722 QSOX2 CARD9 SNAPC4 GPSM1 CCDC187 ESP33 DNLZ NOTCH1 SEC16A
nsv615963	Chr.9:136386314 - 136474501 on Build GRCh38	Loss	INPP5E SNAPC4 PMPCA SDCCAG3 SEC16A
nsv951202	Chr.9:135770355 - 136558248 on Build GRCh38	Deletion	NACC2 C9orf69 CAMSAP1 QSOX2 CARD9 KCNT1 MIR4673 MIR4674 ESP33 DNLZ NOTCH1 SEC16A NALT1 LOC107987142 INPP5E C9orf163 LOC105376323 PMPCA SDCCAG3 DKFZP434A062 LHX3 UBAC1 LOC101928722 SNAPC4 GPSM1 CCDC187

More Information

Additional Information:

For this assay, SNP(s) [rs114269216,rs73670254] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cell cycle
protein transport
regulation of cytokinesis
cell division
retrograde transport, endosome to plasma membrane

Function(s)

protein binding