Name: [Hs02723549_cn] [PTPN6]
Creator: Thermo Fisher Scientific
Keywords: [PTPN6] Assay, [protein tyrosine phosphatase, non-receptor type 6] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5777
Gene Name:	protein tyrosine phosphatase, non-receptor type 6
Gene Aliases:	HCP, HCPH, HPTP1C, PTP-1C, SH-PTP1, SHP-1, SHP-1L, SHP1
Location:	Chr.12:6946576-6961316 on Build GRCh38
Assay Gene Location:	Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PTPN6	NM_002831.5	2	304	NP_002822.2
	NM_080548.4	2	217	NP_536858.1
	NM_080549.3	2	304	NP_536859.1
	XM_006718994.1	2	290	XP_006719057.1
	XM_011520988.1	2	218	XP_011519290.1
	AF178946.1	2	86	AAD53317.1
	AK223629.1	2	199	BAD97349.1
	AK290421.1	2	187
	AK298470.1	2	219
	AK300167.1
	AK308230.1	2	252
	AK309037.1	2	165
	AK313379.1	2	217
	BC002523.2	2	203	AAH02523.1
	BC007667.2	2	203	AAH07667.1
	BG754792.1	2	237
	BM742181.1	2	217
	BT007390.1	1	68	AAP36054.1
	CR986427.1	2	295
	DA431502.1	2	217
	DA868001.1	2	221
	DC297194.1	2	304
	M74903.1	2	145	AAA35963.1
	M77273.1	2	206	AAA36610.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv557262	Chr.12:6943922 - 6954519 on Build GRCh38	Gain	PTPN6 C12orf57
dgv2324n54	Chr.12:6945768 - 6956472 on Build GRCh38	Loss	PTPN6 C12orf57
nsv1047373	Chr.12:6902891 - 7055754 on Build GRCh38	Gain	RNU7-1 LPCAT3 LRRC23 PHB2 SCARNA12 MIR200C EMG1 PTPN6 MIR141 ATN1 LOC105369635 C12orf57 ENO2
dgv2325n54	Chr.12:6946329 - 6960947 on Build GRCh38	Loss	PTPN6
nsv509453	Chr.12:6896530 - 7007852 on Build GRCh38	Insertion	RNU7-1 LPCAT3 LRRC23 PHB2 SCARNA12 MIR200C EMG1 PTPN6 MIR141 ATN1 LOC105369635 C12orf57 ENO2
nsv1035811	Chr.12:6876316 - 6994911 on Build GRCh38	Gain	RNU7-1 RPL13P5 LPCAT3 DSTNP2 LRRC23 PHB2 SCARNA12 MIR200C EMG1 PTPN6 MIR141 ATN1 LOC105369635 C12orf57 LOC105369632 ENO2
dgv2326n54	Chr.12:6951683 - 6960947 on Build GRCh38	Loss	PTPN6