Hs02744614_cn

• Gene Symbol: LRRC36
• Assay Reference Genome Location: Chr.16:67347495 on build GRCh38
• Cytoband: 16q22.1

Target Gene Details

• Entrez Gene ID: 55282
• Gene Name: leucine rich repeat containing 36
• Gene Aliases: RORBP70, XLHSRF2
• Location: Chr.16:67326844-67385206 on Build GRCh38
• Assay Gene Location: Within Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC36	NM_001161575.1	1	141	NP_001155047.1
	NM_018296.5			NP_060766.5
	XM_005256025.2			XP_005256082.1
	XM_005256026.2			XP_005256083.1
	XM_005256027.2			XP_005256084.1
	XM_005256028.1			XP_005256085.1
	XM_011523200.1			XP_011521502.1
	XM_011523201.1			XP_011521503.1
	XM_011523202.2			XP_011521504.1
	XM_011523203.1			XP_011521505.1
	XM_011523204.1	1	92	XP_011521506.1
	XM_011523205.1			XP_011521507.1
	XM_011523206.2			XP_011521508.1
	XM_017023400.1			XP_016878889.1
	XM_017023401.1			XP_016878890.1
	XM_017023402.1			XP_016878891.1
	AK001866.1	1	120	BAA91949.1
	AK292311.1	1	120
	AK297329.1	1	128
	AK301766.1	1	95
	AK309897.1	1	124
	AK311487.1
	AY313780.1	1	104	AAP81011.1
	AY963267.1
	BC026156.2
	BP294008.1	1	141

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv522852	Chr.16:67153308 - 68071571 on Build GRCh38	Gain	FBXL8 KIAA0895L NUTF2 RANBP10 CARMIL2 FHOD1 DDX28 LRRC29 LOC100505942 TMEM208 LCAT CENPT DUS2 SLC9A5 PSKH1 THAP11 ZDHHC1 EXOC3L1 CTRL FAM65A ELMO3 PSMB10 HSF4 NRN1L PLEKHG4 LOC100131303 MIR328 SLC12A4 LOC105369155 PARD6A LRRC36 HSD11B2 ENKD1 TPPP3 TSNAXIP1 DPEP2 NOL3 E2F4 AGRP CTCF KCTD19 C16orf86 EDC4 LOC107984813 ATP6V0D1 ACD TRADD GFOD2 DPEP3
nsv833265	Chr.16:67327714 - 67373302 on Build GRCh38	Loss	LRRC36
nsv572906	Chr.16:67237955 - 67368685 on Build GRCh38	Loss	LRRC36 PLEKHG4 FHOD1 SLC9A5 KCTD19
esv3638884	Chr.16:67346423 - 67348933 on Build GRCh38	Loss	LRRC36
nsv471092	Chr.16:67174030 - 67518392 on Build GRCh38	Gain	LOC105369155 LRRC36 KIAA0895L ELMO3 HSD11B2 FHOD1 LRRC29 LOC100505942 TMEM208 ATP6V0D1 TPPP3 PLEKHG4 NOL3 SLC9A5 E2F4 AGRP MIR328 ZDHHC1 KCTD19 EXOC3L1
nsv524363	Chr.16:67136529 - 68071571 on Build GRCh38	Loss	FBXL8 KIAA0895L NUTF2 RANBP10 CARMIL2 FHOD1 DDX28 LRRC29 LOC100505942 C16orf70 TMEM208 LCAT CENPT DUS2 SLC9A5 PSKH1 THAP11 ZDHHC1 EXOC3L1 CTRL FAM65A ELMO3 PSMB10 HSF4 NRN1L PLEKHG4 LOC100131303 MIR328 SLC12A4 LOC105369155 PARD6A LRRC36 B3GNT9 HSD11B2 ENKD1 TPPP3 TSNAXIP1 DPEP2 NOL3 E2F4 AGRP CTCF KCTD19 C16orf86 EDC4 LOC107984813 ATP6V0D1 ACD TRADD GFOD2 DPEP3

More Information

Additional Information:

For this assay, SNP(s) [rs79636320] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation