Hs02769623_cn

• Gene Symbol: YTHDF1
• Assay Reference Genome Location: Chr.20:63196041 on build GRCh38
• Cytoband: 20q13.33

Target Gene Details

• Entrez Gene ID: 54915
• Gene Name: YTH N6-methyladenosine RNA binding protein 1
• Gene Aliases: C20orf21
• Location: Chr.20:63195429-63216186 on Build GRCh38
• Assay Gene Location: Within Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
YTHDF1	NM_017798.3	5	2641	NP_060268.2
	AB055518.1	2	1982	BAB62751.1
	AK000398.1	3	1802	BAA91138.1
	AK024546.1	1	154
	AK095795.1	5	2359
	AL834366.1	2	1762	CAD39029.1
	BC003681.1	4	2315	AAH03681.1
	BC016920.2	2	2058	AAH16920.2
	BC050284.1	5	2641	AAH50284.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv519n27	Chr.20:63154307 - 63248817 on Build GRCh38	Loss	MIR124-3 BIRC7 YTHDF1 LOC107985425 MIR3196 NKAIN4
nsv953306	Chr.20:63151949 - 63571247 on Build GRCh38	Deletion	MIR124-3 ARFGAP1 BIRC7 COL20A1 CHRNA4 EEF1A2 PTK6 LOC100130587 LOC102723788 LOC107985425 FLJ16779 NKAIN4 PPDPF HELZ2 YTHDF1 KCNQ2 FNDC11 MIR4326 LOC100130152 SRMS MIR3196
dgv68n68	Chr.20:63076461 - 63224595 on Build GRCh38	Loss	MIR124-3 HAR1A LOC63930 YTHDF1 HAR1B
nsv586559	Chr.20:63195172 - 63248817 on Build GRCh38	Gain	BIRC7 YTHDF1 LOC107985425 MIR3196 NKAIN4
nsv828798	Chr.20:63194266 - 63202129 on Build GRCh38	Loss	YTHDF1
nsv9825	Chr.20:62775470 - 63601330 on Build GRCh38	Gain	MIR124-3 ARFGAP1 COL9A3 CHRNA4 LOC107985428 TCFL5 DPH3P1 FLJ16779 YTHDF1 GMEB2 KCNQ2 MRGBP HAR1B MIR4326 LOC100130152 SRMS LINC00659 GID8 LINC00029 BIRC7 OGFR-AS1 LOC63930 COL20A1 BHLHE23 EEF1A2 OGFR PTK6 LOC100130587 LOC102723788 LOC107985425 NKAIN4 HAR1A PPDPF HELZ2 SLC17A9 LINC01056 FNDC11 DIDO1 MIR3196
nsv834031	Chr.20:63132252 - 63245925 on Build GRCh38	Loss	MIR124-3 BIRC7 YTHDF1 LOC107985425 MIR3196 NKAIN4
esv2722892	Chr.20:63194513 - 63197931 on Build GRCh38	Deletion	YTHDF1

More Information

Additional Information:

For this assay, SNP(s) [rs115217679,rs73310829] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

positive regulation of translational initiation

Function(s)

ribosome binding
poly(A) RNA binding
N6-methyladenosine-containing RNA binding