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See other GCC2 CNV Assays ›
Gene Symbol
GCC2
Assay Reference Genome
Location

Chr.2:108452515 on build GRCh38
Cytoband
2q12.3
Assay ID Hs02772363_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9648

Gene Name:

 GRIP and coiled-coil domain containing 2

Gene Aliases:

 GCC185, RANBP2L4, REN53

Location:

 Chr.2:108448561-108509398 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 4 - Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GCC2 NM_181453.3 NP_852118.1
NR_028063.1
XM_006712870.3 XP_006712933.1
XM_006712871.1 XP_006712934.1
XM_006712872.3 XP_006712935.1
XM_011512213.2 XP_011510515.1
AB002334.1 BAA20794.2
AF432211.1 AAL99918.1
AK090813.1
AK308707.1
BC020645.1
BC037774.2 AAH37774.1
BC146789.1
DA865539.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759081 Chr.2:107833421 - 108606881 on Build GRCh38 Gain SULT1C4 RGPD4 LINC01593 GCC2-AS1 GCC2 SULT1C2P1 SLC5A7 LIMS1 LINC01594 SULT1C3 SULT1C2
nsv834328 Chr.2:108422875 - 108613866 on Build GRCh38 Gain GCC2-AS1 GCC2 LIMS1
esv2720498 Chr.2:107831020 - 108722824 on Build GRCh38 Deletion SULT1C4 RGPD4 LINC01593 GCC2-AS1 GCC2 SULT1C2P1 SLC5A7 LIMS1 LINC01594 SULT1C3 SULT1C2 RANBP2
esv3591913 Chr.2:107888082 - 108504967 on Build GRCh38 Gain SULT1C4 RGPD4 LINC01593 GCC2 SULT1C2P1 SLC5A7 LINC01594 SULT1C3 SULT1C2
dgv724e199 Chr.2:107883507 - 108515482 on Build GRCh38 Deletion SULT1C4 RGPD4 LINC01593 GCC2-AS1 GCC2 SULT1C2P1 SLC5A7 LINC01594 SULT1C3 SULT1C2
nsv469774 Chr.2:108316735 - 108461238 on Build GRCh38 Gain SULT1C4 GCC2 SULT1C2P1
dgv4035n100 Chr.2:107924531 - 108493578 on Build GRCh38 Gain SULT1C4 LINC01593 GCC2 SULT1C2P1 SLC5A7 LINC01594 SULT1C3 SULT1C2

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More Information


Additional Information:

For this assay, SNP(s) [rs73954346] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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