Hs02777741_cn

• Gene Symbol: SLCO4A1
• Assay Reference Genome Location: Chr.20:62666437 on build GRCh38
• Cytoband: 20q13.33

Target Gene Details

• Entrez Gene ID: 28231
• Gene Name: solute carrier organic anion transporter family member 4A1
• Gene Aliases: OATP-E, OATP1, OATP4A1, OATPE, OATPRP1, POAT, SLC21A12
• Location: Chr.20:62642445-62690700 on Build GRCh38
• Assay Gene Location: Within Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLCO4A1	NM_016354.3	7	1539	NP_057438.3
	XM_005260203.2	7	1536	XP_005260260.1
	XM_011528792.2	7	1536	XP_011527094.1
	XM_017027826.1	7	1520	XP_016883315.1
	XM_017027827.1	7	1536	XP_016883316.1
	AB031051.1	6	1425	BAA89288.1
	AF104334.1	7	1471	AAF15545.1
	AF187817.1	6	1334	AAG43447.1
	AF205072.1	7	1479	AAG42204.1
	AK023410.1	3	1040	BAB14566.1
	BC015727.1	7	1497	AAH15727.1

Target Gene Details

• Entrez Gene ID: 100127888
• Gene Name: SLCO4A1 antisense RNA 1
• Gene Aliases: -
• Location: Chr.20:62663027-62666621 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLCO4A1-AS1	NR_024470.1	1	185
	BC025345.1	1	185	AAH25345.1
	BU741282.1	2	468

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2422398	Chr.20:62207833 - 62674040 on Build GRCh38	Duplication	MIR1-1HG OSBPL2 RBBP8NL SLCO4A1 MIR133A2 HRH3 ADRM1 SLCO4A1-AS1 C20orf166-AS1 CABLES2 MIR1-1 LOC105369209 MIR4758 LAMA5-AS1 LAMA5 GATA5 RPS21
nsv586504	Chr.20:62658391 - 62688263 on Build GRCh38	Loss	SLCO4A1 SLCO4A1-AS1
nsv834026	Chr.20:62636291 - 62795287 on Build GRCh38	Loss	NTSR1 SLCO4A1 LOC107987285 SLCO4A1-AS1 LINC00659 LOC107985428
nsv586496	Chr.20:62332390 - 62812195 on Build GRCh38	Gain	MIR1-1HG RBBP8NL SLCO4A1 LOC107987285 MIR133A2 SLCO4A1-AS1 C20orf166-AS1 LINC00659 CABLES2 LOC107985428 MIR1-1 MIR4758 NTSR1 LAMA5-AS1 LAMA5 GATA5 OGFR-AS1 OGFR MRGBP RPS21
nsv586503	Chr.20:62645662 - 62776055 on Build GRCh38	Gain	NTSR1 SLCO4A1 LOC107987285 SLCO4A1-AS1 LINC00659 LOC107985428
nsv953302	Chr.20:62345345 - 62831248 on Build GRCh38	Deletion	MIR1-1HG RBBP8NL SLCO4A1 LOC107987285 MIR133A2 SLCO4A1-AS1 C20orf166-AS1 LINC00659 CABLES2 LOC107985428 MIR1-1 COL9A3 NTSR1 LAMA5-AS1 LAMA5 GATA5 OGFR-AS1 OGFR MRGBP RPS21
nsv428380	Chr.20:62632018 - 62935383 on Build GRCh38	Loss	DIDO1 SLCO4A1 LOC107987285 TCFL5 SLCO4A1-AS1 LINC00659 LOC107985428 COL9A3 NTSR1 DPH3P1 OGFR-AS1 OGFR MRGBP

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

transporter

Gene Ontology Categories:

Process(es)

thyroid hormone metabolic process
sodium-independent organic anion transport
thyroid hormone transport

Function(s)

sodium-independent organic anion transmembrane transporter activity
thyroid hormone transmembrane transporter activity