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See other ATF5 CNV Assays ›
Gene Symbol
ATF5
Assay Reference Genome
Location

Chr.19:49933583 on build GRCh38
Cytoband
19q13.33
Assay ID Hs02808637_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 22809

Gene Name:

 activating transcription factor 5

Gene Aliases:

 ATFX, HMFN0395

Location:

 Chr.19:49928702-49933936 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATF5 NM_001193646.1 3 1717 NP_001180575.1
NM_001290746.1 3 1688 NP_001277675.1
NM_012068.5 4 1922 NP_036200.2
XM_011526629.2 3 1624 XP_011524931.1
AB021663.2 3 1659 BAA78477.2
AB073613.1 3 1655 BAD38650.1
AK091985.1 2 1631
BU730542.1 1 372

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss CABP5 CGB3 SNORD32A SULT2B1 FUZ LHB SNAR-C3 FUT2 SEC1P HSD17B14 NOSIP FUT1 SNAR-D SNAR-A6 LOC105447645 CGB1 PLEKHA4 FLT3LG RUVBL2 CCDC114 MIR4751 SLC6A16 TULP2 MIR150 SNAR-A2 CARD8 AP2A1 FAM83E PTOV1-AS2 VRK3 MIR4324 KCNJ14 MIR6798 RPL13A PIH1D1 DHDH PTOV1-AS1 SNAR-B1 TBC1D17 TSKS SNAR-A11 MIR4750 PLA2G4C SPACA4 FTL SNAR-C4 SNAR-A4 ZNF114 ELSPBP1 RASIP1 GRIN2D GYS1 PPP1R15A LMTK3 C19orf68 NUCB1 MIR5088 NUCB1-AS1 SNAR-B2 NTN5 DKKL1 GRWD1 SNORD34 PRR12 EMP3 TEAD2 PRMT1 KDELR1 MIR6800 SNAR-A3 ALDH16A1 SNRNP70 BCAT2 SPHK2 HRC CA11 CGB5 RRAS MIR6799 BSPH1 ADM5 IRF3 ATF5 SNAR-A10 SNAR-G1 CPT1C FCGRT TMEM143 GFY CCDC155 SNAR-A1 ZNF473 PTH2 LIN7B SNORD35B CGB2 PTOV1 SYNGR4 LIG1 PRRG2 RPL18 FGF21 IL4I1 NUP62 LOC101059948 AKT1S1 PNKP PPFIA3 SLC17A7 RPS11 CD37 SNAR-C5 SCAF1 SNAR-C2 FLJ26850 SNAR-A13 KCNA7 LOC100287477 LOC101928295 CGB7 SNAR-A8 SIGLEC11 SIGLEC16 NTF4 MAMSTR SNAR-C1 SNAR-A5 SNAR-A12 DBP SNAR-G2 IZUMO1 SNAR-A9 SNAR-A7 C19orf73 SNORD35A MIR4749 MED25 LOC105372430 PLA2G4C-AS1 TRPM4 SNORD33 BCL2L12 BAX CGB8 RCN3 CARD8-AS1 CYTH2 SNAR-A14
nsv1065648 Chr.19:49924738 - 50001154 on Build GRCh38 Gain VRK3 SIGLEC11 ATF5 SIGLEC16 MIR4751 IL4I1 NUP62
dgv53n68 Chr.19:49724393 - 49943224 on Build GRCh38 Loss AKT1S1 PNKP MIR6800 PTOV1-AS1 FUZ MIR4749 AP2A1 MED25 TBC1D17 TSKS PTOV1-AS2 MIR4750 PTOV1 MIR6799 ATF5 MIR4751 IL4I1 NUP62
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion AKT1S1 PNKP MIR6800 PTOV1-AS1 SCAF1 FUZ TBC1D17 TSKS NOSIP MIR4750 RRAS MIR6799 ADM5 IRF3 ATF5 MIR4751 CPT1C MIR5088 MIR4749 AP2A1 MED25 PRR12 PTOV1-AS2 BCL2L12 PTOV1 PRRG2 PRMT1 IL4I1 NUP62
nsv579910 Chr.19:49915478 - 49957657 on Build GRCh38 Gain SIGLEC11 ATF5 MIR4751 IL4I1 NUP62
esv3644630 Chr.19:49877826 - 50039767 on Build GRCh38 Gain VRK3 MIR4750 AKT1S1 SIGLEC11 ATF5 SIGLEC16 TBC1D17 MIR4751 IL4I1 ZNF473 NUP62
dgv54n68 Chr.19:49848512 - 50008788 on Build GRCh38 Loss AKT1S1 PNKP PTOV1-AS1 MIR4749 TBC1D17 PTOV1-AS2 VRK3 MIR4750 PTOV1 SIGLEC11 ATF5 SIGLEC16 MIR4751 IL4I1 NUP62
nsv1058623 Chr.19:49918762 - 49966847 on Build GRCh38 Gain SIGLEC11 ATF5 MIR4751 IL4I1 NUP62
nsv579911 Chr.19:49930731 - 49969159 on Build GRCh38 Gain SIGLEC11 ATF5 MIR4751

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