Hs02824709_cn

• Gene Symbol: SCNM1
• Assay Reference Genome Location: Chr.1:151168238 on build GRCh38
• Cytoband: 1q21.3

Target Gene Details

• Entrez Gene ID: 79005
• Gene Name: sodium channel modifier 1
• Gene Aliases: -
• Location: Chr.1:151166022-151170297 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SCNM1	NM_001204856.1	6	673	NP_001191785.1
	NM_024041.3	6	624	NP_076946.1
	NR_037937.1	6	574
	AA374943.1	2	255
	AK056322.1	6	593	BAB71149.1
	AV718162.2	6	550
	BC000264.1	6	568	AAH00264.1
	BU540926.1	6	440

Target Gene Details

• Entrez Gene ID: 100534012
• Gene Name: TNFAIP8L2-SCNM1 readthrough
• Gene Aliases: -
• Location: Chr.1:151156629-151170297 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TNFAIP8L2-SCNM1	NM_001204848.1	6	536	NP_001191777.1
	BG531092.1	6	502
	CR999387.1	5	517

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv522840	Chr.1:150961247 - 151375270 on Build GRCh38	Gain	VPS72 TNFAIP8L2-SCNM1 SELENBP1 MLLT11 SEMA6C PIP5K1A ZNF687 CDC42SE1 ANXA9 GABPB2 TNFAIP8L2 RFX5 SCNM1 LOC100507670 C1orf56 PRUNE1 BNIPL SETDB1 GBAT2 PSMD4 LYSMD1 FAM63A PI4KB TMOD4 CERS2
esv3587520	Chr.1:151167937 - 151168786 on Build GRCh38	Loss	SCNM1 TNFAIP8L2-SCNM1
dgv2n68	Chr.1:151136983 - 151309302 on Build GRCh38	Loss	VPS72 SCNM1 TNFAIP8L2-SCNM1 SEMA6C LOC100507670 PIP5K1A LYSMD1 PI4KB TMOD4 PSMD4 ZNF687 TNFAIP8L2

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Process(es)

mRNA processing
RNA splicing

Function(s)

protein binding
enzyme binding
metal ion binding