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Gene Symbol
CSGALNACT1
Assay Reference Genome
Location

Chr.8:19404523 on build GRCh38
Cytoband
8p21.3
Assay ID Hs02859146_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 55790

Gene Name:

 chondroitin sulfate N-acetylgalactosaminyltransferase 1

Gene Aliases:

 CSGalNAcT-1, ChGn, beta4GalNAcT

Location:

 Chr.8:19404161-19757940 on Build GRCh38

Assay Gene Location:

 Within Exon 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CSGALNACT1 NM_001130518.1 10 3920 NP_001123990.1
NM_018371.4 10 3510 NP_060841.5
NR_024040.1 10 3589
XM_006716358.2 9 3801 XP_006716421.1
XM_006716359.2 10 4170 XP_006716422.1
XM_006716360.2 11 4318 XP_006716423.1
XM_006716361.2 10 4065 XP_006716424.1
XM_006716362.2 9 3388 XP_006716425.1
XM_006716363.1 9 3560 XP_006716426.1
XM_006716364.3 8 3244 XP_006716427.1
XM_011544578.1 12 4437 XP_011542880.1
XM_011544579.1 11 4289 XP_011542881.1
XM_011544580.1 10 4167 XP_011542882.1
XM_011544582.1 10 4175 XP_011542884.1
XM_011544583.1 8 3354 XP_011542885.1
XM_011544584.1 8 3238 XP_011542886.1
XM_011544585.2 7 2321 XP_011542887.1
XM_017013623.1 13 4487 XP_016869112.1
XM_017013624.1 10 4126 XP_016869113.1
XM_017013625.1 8 3403 XP_016869114.1
XM_017013626.1 9 3333 XP_016869115.1
XM_017013627.1 10 5727 XP_016869116.1
XM_017013628.1 9 5587 XP_016869117.1
XM_017013629.1 10 3518 XP_016869118.1
XM_017013630.1 10 3431 XP_016869119.1
XM_017013631.1 9 3392 XP_016869120.1
XM_017013632.1 10 3501 XP_016869121.1
XM_017013633.1 10 3488 XP_016869122.1
XM_017013634.1 10 3485 XP_016869123.1
XM_017013635.1 10 3493 XP_016869124.1
XM_017013636.1 11 3636 XP_016869125.1
XM_017013637.1 10 3493 XP_016869126.1
XM_017013638.1 11 3678 XP_016869127.1
XM_017013639.1 9 3326 XP_016869128.1
AB081516.1 8 3198 BAC16217.1
AK002124.1 1 1269
AK002126.1 7 2447 BAA92093.1
AL157483.1 3 1717 CAB75673.1
AY358441.1 10 3510 AAQ88806.1
BQ016671.1 1 380
BX104931.1 1 545
BX649103.1 10 3870

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv3616532 Chr.8:18974801 - 19484110 on Build GRCh38 Gain LOC100128993 PSD3 SH2D4A CSGALNACT1
nsv610752 Chr.8:19397305 - 19453985 on Build GRCh38 Loss CSGALNACT1
nsv610751 Chr.8:19368824 - 19427378 on Build GRCh38 Loss SH2D4A CSGALNACT1
esv34007 Chr.8:19395091 - 19624587 on Build GRCh38 Loss SH2D4A CSGALNACT1
nsv522185 Chr.8:19097292 - 20497802 on Build GRCh38 Gain LOC100128993 ATP6V1B2 INTS10 LZTS1-AS1 SLC18A1 LZTS1 SH2D4A CSGALNACT1 LPL
nsv1016482 Chr.8:18977297 - 19481976 on Build GRCh38 Gain LOC100128993 PSD3 SH2D4A CSGALNACT1

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