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See other RAB40C CNV Assays ›
Gene Symbol
RAB40C
Assay Reference Genome
Location

Chr.16:617289 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02884719_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57799

Gene Name:

 RAB40C, member RAS oncogene family

Gene Aliases:

 RARL, RASL8C

Location:

 Chr.16:589357-629273 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 5 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RAB40C NM_001172663.1 NP_001166134.1
NM_001172664.1 NP_001166135.1
NM_001172665.1 NP_001166136.1
NM_001172666.1 NP_001166137.1
NM_021168.4 NP_066991.3
AY823398.1 AAV83924.1
BC028696.1 AAH28696.1
BG696681.1
BG715678.1
BM545442.1
BQ685517.1
BX442451.2
CX783728.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4824n54 Chr.16:605686 - 670986 on Build GRCh38 Loss MCRIP2 LOC105371038 RHOT2 METTL26 WFIKKN1 LOC100287175 RAB40C WDR90
nsv833113 Chr.16:506513 - 628160 on Build GRCh38 Loss RAB11FIP3 CAPN15 MIR3176 LOC101929280 LOC107987233 PIGQ LINC00235 NHLRC4 MIR5587 PRR35 RAB40C
nsv1040486 Chr.16:600788 - 627854 on Build GRCh38 Gain RAB40C
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication METRN AXIN1 NTN3 MPG TPSD1 TSR3 PDPK1 NTHL1 MIR6859-4 CRAMP1 MIR662 C1QTNF8 HBA2 HBM MIR3677 CCDC154 JMJD8 PGP ERVK13-1 WDR90 FBXL16 HAGH LOC105371038 PRSS27 SOX8 LOC105371046 FAHD1 MIR6767 LOC105371047 SNRNP25 GNPTG MIR3180-5 ARHGDIG DNASE1L2 RHOT2 RGS11 IGFALS WASIR2 PIGQ LMF1-AS1 SSTR5 ECI1 CASKIN1 EME2 SLC9A3R2 LOC101929280 GNG13 WFIKKN1 PKD1 FAM234A TSC2 MIR5587 LOC100287175 NME4 SNORA10 LINC00254 DECR2 SNHG9 RPL3L TMEM204 MIR6511B1 MAPK8IP3 NME3 CCNF AMDHD2 PRSS29P LOC107987233 LOC100134368 SNORA64 PRR35 WDR24 STUB1 BAIAP3 CACNA1H C16orf91 MIR3176 LOC105371184 RPUSD1 ABCA17P PTX4 MSLN PRR25 MIR940 RAB40C HBA1 MCRIP2 FAM173A LOC652276 LOC105371045 SSTR5-AS1 NARFL MLST8 TPSAB1 NPRL3 MRPS34 RAB11FIP3 MIR6768 RHBDF1 IFT140 POLR3K BRICD5 MIR4717 ABCA3 MIR3178 MIR3177 SNORD60 TBC1D24 LOC729652 MIR4516 MIR1225 TMEM8A LOC105371049 ATP6V0C KCTD5 NPW NDUFB10 NOXO1 LOC107984876 GFER LMF1 LOC106660606 RHBDL1 HS3ST6 TPSB2 LINC00235 HBQ1 SNORA78 FLJ42627 HAGHL CLCN7 RPL23AP5 CEMP1 LUC7L METTL26 SNHG19 TRAF7 UNKL NUBP2 MRPL28 HN1L CHTF18 RPS2 TELO2 C16orf59 CCDC78 SPSB3 MSRB1 SYNGR3 RNPS1 CAPN15 E4F1 DDX11L10 TBL3 RNF151 PDIA2 TPSG1 NHLRC4 HBZ ZNF598 MEIOB UBE2I RAB26
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss MCRIP2 LOC101929280 METRN FAM173A RHBDL1 GNG13 WFIKKN1 LINC00235 NARFL HAGHL MIR5587 LOC100287175 RAB11FIP3 MIR662 METTL26 JMJD8 WDR90 FBXL16 LOC105371038 LOC107987233 CHTF18 PRR35 CCDC78 WDR24 STUB1 CAPN15 MIR3176 LOC105371184 RPUSD1 RHOT2 PIGQ MSLN NHLRC4 PRR25 RAB40C
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss MCRIP2 LOC101929280 METRN FAM173A RHBDL1 GNG13 WFIKKN1 LINC00235 NARFL HAGHL MIR5587 LOC100287175 RAB11FIP3 MIR662 METTL26 JMJD8 WDR90 FBXL16 LOC105371038 LOC107987233 CHTF18 PRR35 CCDC78 WDR24 STUB1 CAPN15 MIR3176 LOC105371184 RPUSD1 RHOT2 PIGQ MSLN NHLRC4 PRR25 RAB40C
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion MCRIP2 LOC101929280 METRN FAM173A RHBDL1 GNG13 WFIKKN1 SSTR5-AS1 LINC00235 NARFL HAGHL MIR5587 LOC100287175 RAB11FIP3 MIR662 METTL26 C1QTNF8 JMJD8 WDR90 FBXL16 LOC105371038 SOX8 LOC107987233 CHTF18 PRR35 CCDC78 WDR24 STUB1 CAPN15 MIR3176 LOC105371184 RPUSD1 RHOT2 PIGQ LOC107984876 LMF1-AS1 MSLN SSTR5 NHLRC4 PRR25 RAB40C LMF1
dgv4823n54 Chr.16:562698 - 662867 on Build GRCh38 Loss MCRIP2 LOC105371038 LOC101929280 METTL26 LOC107987233 WFIKKN1 PIGQ NHLRC4 LOC100287175 PRR35 RAB40C WDR90
nsv571012 Chr.16:583354 - 748489 on Build GRCh38 Loss MCRIP2 LOC105371038 LOC101929280 METRN FAM173A RHBDL1 WFIKKN1 NARFL HAGHL LOC100287175 CCDC78 WDR24 STUB1 LOC105371184 RHOT2 METTL26 PIGQ JMJD8 RAB40C WDR90 FBXL16
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication MCRIP2 LOC101929280 METRN FAM173A RHBDL1 GNG13 WFIKKN1 NARFL HAGHL LOC100287175 MIR662 METTL26 JMJD8 WDR90 FBXL16 LOC105371038 CHTF18 CCDC78 WDR24 STUB1 LOC105371184 RPUSD1 RHOT2 PIGQ MSLN RAB40C
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication MCRIP2 LOC101929280 METRN FAM173A RHBDL1 GNG13 WFIKKN1 LINC00235 NARFL HAGHL MIR5587 LOC100287175 RAB11FIP3 MIR662 METTL26 JMJD8 WDR90 FBXL16 LOC105371038 LOC107987233 CHTF18 PRR35 CCDC78 WDR24 STUB1 CAPN15 MIR3176 LOC105371184 RPUSD1 RHOT2 PIGQ MSLN NHLRC4 PRR25 RAB40C

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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