Hs02949422_cn

• Gene Symbol: SLCO1A2
• Assay Reference Genome Location: Chr.12:21268851 on build GRCh38
• Cytoband: 12p12.1

Target Gene Details

• Entrez Gene ID: 6579
• Gene Name: solute carrier organic anion transporter family member 1A2
• Gene Aliases: OATP, OATP-A, OATP1A2, SLC21A3
• Location: Chr.12:21264600-21403657 on Build GRCh38
• Assay Gene Location: Within Exon 20

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLCO1A2	NM_021094.3	14	2961	NP_066580.1
	NM_134431.3	16	3431	NP_602307.1
	XM_005253474.3	15	2852	XP_005253531.1
	XM_005253477.3	14	2739	XP_005253534.1
	XM_011520818.1	15	2859	XP_011519120.1
	XM_011520819.1	15	3006	XP_011519121.1
	XM_011520820.2	15	4328	XP_011519122.1
	XM_011520821.2	8	3131	XP_011519123.1
	DA184882.1	1	91
	U21943.1			AAA87732.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3628799	Chr.12:20916259 - 21333930 on Build GRCh38	Loss	SLCO1B1 SLCO1B3 SLCO1A2 SLCO1B7
nsv557734	Chr.12:21268321 - 21272579 on Build GRCh38	Loss	SLCO1A2

More Information

Additional Information:

For this assay, SNP(s) [rs112403792] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

transporter

Gene Ontology Categories:

Process(es)

bile acid metabolic process
organic anion transport
bile acid and bile salt transport
sodium-independent organic anion transport
mitophagy in response to mitochondrial depolarization

Function(s)

organic anion transmembrane transporter activity
bile acid transmembrane transporter activity
sodium-independent organic anion transmembrane transporter activity