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Gene Symbol
ATF6B
Assay Reference Genome
Location

Chr.6:32117405 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02983437_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 1388

Gene Name:

 activating transcription factor 6 beta

Gene Aliases:

 CREB-RP, CREBL1, G13

Location:

 Chr.6:32115268-32128240 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 13 - Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATF6B NM_001136153.1 NP_001129625.1
NM_004381.4 NP_004372.3
BC077075.1 AAH77075.1
U31903.1 AAA97438.1
U52701.1
X98054.1 CAA66664.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss LOC100507547 PRRT1 AGPAT1 RNF5 EGFL8 PBX2 MIR6721 PPT2-EGFL8 ATF6B TNXB MIR6833 NOTCH4 AGER FKBPL PPT2 GPSM3
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss LOC100507547 PRRT1 CYP21A1P RNF5 BTNL2 HCG23 PPT2-EGFL8 HLA-DQA2 ATF6B C6orf10 HLA-DQA1 HLA-DRB6 HLA-DRB1 C4B TNXA NOTCH4 AGER FKBPL GPSM3 AGPAT1 EGFL8 PBX2 HLA-DRB5 HLA-DQB2 MIR3135B MIR6721 TNXB MIR6833 LOC101929163 HLA-DQB1-AS1 HLA-DRA HLA-DQB1 C4A PPT2 CYP21A2
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss LOC100507547 HCG23 SLC44A4 C6orf10 HLA-DRB1 C4B SNORD48 TNXA NOTCH4 C2-AS1 AGER FKBPL HSPA1B AGPAT1 DXO PBX2 HLA-DRB5 STK19 TNXB LOC101929163 HLA-DQB1 PPT2 PRRT1 EHMT2 CYP21A1P RNF5 HSPA1A NELFE BTNL2 PPT2-EGFL8 MIR1236 ATF6B C6orf48 HLA-DQA1 HLA-DRB6 ZBTB12 GPSM3 SNORD52 EGFL8 MIR6721 C2 CFB MIR6833 HLA-DQB1-AS1 HLA-DRA SKIV2L C4A NEU1 CYP21A2
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss LOC100507547 PRRT1 CYP21A1P RNF5 NELFE PPT2-EGFL8 MIR1236 ATF6B C4B TNXA NOTCH4 C2-AS1 AGER FKBPL GPSM3 AGPAT1 DXO EGFL8 PBX2 MIR6721 C2 CFB STK19 TNXB MIR6833 SKIV2L C4A PPT2 CYP21A2
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LOC100507547 DDX39B-AS1 HCG23 LY6G6F LOC100287329 LSM2 SLC44A4 C6orf10 MICB CSNK2B LY6G5B HLA-DRB1 C4B SNORA38 SNORD48 TNXA NOTCH4 C2-AS1 SAPCD1-AS1 AGER FKBPL LY6G6D HSPA1B MIR6832 MCCD1 AGPAT1 DXO PBX2 LTA HLA-DRB5 DDX39B LY6G6E C6orf47 NCR3 GPANK1 STK19 TNXB LOC101929163 ATP6V1G2-DDX39B VWA7 MSH5 HCG26 DDAH2 VARS PPT2 PRRT1 EHMT2 CYP21A1P MIR4646 ATP6V1G2 RNF5 LTB HSPA1A NELFE LOC102725068 HSPA1L BTNL2 HCP5 TNF PPT2-EGFL8 MIR1236 ATF6B C6orf48 MSH5-SAPCD1 LST1 HLA-DRB6 ZBTB12 LY6G6C CLIC1 LY6G5C GPSM3 PRRC2A SNORD117 SAPCD1 SNORD52 AIF1 EGFL8 SNORD84 NFKBIL1 MIR6721 ABHD16A C2 CFB C6orf25 MIR6833 BAG6 HLA-DRA SKIV2L C4A NEU1 APOM CYP21A2
nsv1028506 Chr.6:32105835 - 32139754 on Build GRCh38 Gain ATF6B TNXB FKBPL
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion DDX39B-AS1 HCG23 LSM2 SLC44A4 C6orf10 HLA-DOA HLA-DRB1 C4B SNORD48 TNXA C2-AS1 SAPCD1-AS1 AGER FKBPL AGPAT1 DDX39B C6orf47 KIFC1 STK19 HLA-DPA1 LOC101929163 ATP6V1G2-DDX39B VWA7 TAP1 MSH5 HCG26 MIR5004 RXRB PRRT1 MIR4646 HSPA1A DAXX LOC102725068 HSPA1L HCP5 SYNGAP1 MIR1236 ATF6B HLA-DMA ZBTB12 LOC100294145 MIR6873 LY6G5C GPSM3 SNORD117 SNORD52 AIF1 PSMB8-AS1 SNORD84 SLC39A7 MIR6721 ABHD16A CFB MIR6833 BAG6 HLA-DQB1-AS1 PHF1 SKIV2L C4A NEU1 APOM LOC100507547 RGL2 HLA-DMB HLA-DPB2 PPP1R2P1 PSMB8 LY6G6F VPS52 LOC100287329 HLA-DQA2 MIR219A1 MICB CSNK2B LY6G5B SNORA38 NOTCH4 LY6G6D MIR6834 HSPA1B MIR6832 MCCD1 TAP2 RPS18 DXO PBX2 LTA HLA-DRB5 HLA-DQB2 MIR3135B LY6G6E ZBTB9 HCG24 ZBTB22 NCR3 GPANK1 COL11A2 HSD17B8 HLA-DPB1 TNXB HLA-DQB1 PFDN6 DDAH2 VARS PPT2 PSMB9 EHMT2 TAPBP CYP21A1P ATP6V1G2 RNF5 LTB RING1 NELFE BTNL2 TNF PPT2-EGFL8 WDR46 C6orf48 MSH5-SAPCD1 BRD2 HLA-DQA1 LST1 HLA-DRB6 LY6G6C B3GALT4 CLIC1 PRRC2A HLA-DOB SAPCD1 EGFL8 HCG25 NFKBIL1 CUTA C2 C6orf25 HLA-DRA CYP21A2
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss LOC100507547 PRRT1 AGPAT1 RNF5 EGFL8 PBX2 MIR6721 PPT2-EGFL8 ATF6B TNXB MIR6833 NOTCH4 AGER FKBPL PPT2 GPSM3
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion DDX39B-AS1 HCG23 LSM2 SLC44A4 C6orf10 HLA-DOA HLA-DRB1 C4B SNORD48 TNXA C2-AS1 SAPCD1-AS1 AGER FKBPL AGPAT1 DDX39B C6orf47 KIFC1 STK19 HLA-DPA1 LOC101929163 ATP6V1G2-DDX39B VWA7 TAP1 MSH5 HCG26 MIR5004 RXRB PRRT1 MIR4646 HSPA1A DAXX LOC102725068 HSPA1L HCP5 SYNGAP1 MIR1236 ATF6B HLA-DMA ZBTB12 LOC100294145 MIR6873 LY6G5C GPSM3 SNORD117 SNORD52 AIF1 PSMB8-AS1 SNORD84 SLC39A7 MIR6721 ABHD16A CFB MIR6833 BAG6 HLA-DQB1-AS1 PHF1 SKIV2L C4A NEU1 APOM LOC100507547 RGL2 HLA-DMB HLA-DPB2 PPP1R2P1 PSMB8 LY6G6F VPS52 LOC100287329 HLA-DQA2 MIR219A1 MICB CSNK2B LY6G5B SNORA38 NOTCH4 LY6G6D MIR6834 HSPA1B MIR6832 MCCD1 TAP2 RPS18 DXO PBX2 LTA HLA-DRB5 HLA-DQB2 MIR3135B LY6G6E ZBTB9 HCG24 ZBTB22 NCR3 GPANK1 COL11A2 HSD17B8 HLA-DPB1 TNXB HLA-DQB1 PFDN6 DDAH2 VARS PPT2 PSMB9 EHMT2 TAPBP CYP21A1P ATP6V1G2 RNF5 LTB RING1 NELFE BTNL2 TNF PPT2-EGFL8 WDR46 C6orf48 MSH5-SAPCD1 BRD2 HLA-DQA1 LST1 HLA-DRB6 LY6G6C B3GALT4 CLIC1 PRRC2A HLA-DOB SAPCD1 EGFL8 HCG25 NFKBIL1 CUTA C2 C6orf25 HLA-DRA CYP21A2
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LOC100507547 DDX39B-AS1 HCG23 LY6G6F LOC100287329 LSM2 SLC44A4 C6orf10 MICB CSNK2B LY6G5B C4B SNORA38 SNORD48 TNXA NOTCH4 C2-AS1 SAPCD1-AS1 AGER FKBPL LY6G6D HSPA1B MIR6832 MCCD1 AGPAT1 DXO PBX2 LTA DDX39B LY6G6E C6orf47 NCR3 GPANK1 STK19 TNXB LOC101929163 ATP6V1G2-DDX39B VWA7 MSH5 HCG26 DDAH2 VARS PPT2 MICA PRRT1 EHMT2 CYP21A1P MIR4646 ATP6V1G2 RNF5 LTB HSPA1A NELFE LOC102725068 HSPA1L BTNL2 HCP5 TNF PPT2-EGFL8 MIR1236 ATF6B C6orf48 MSH5-SAPCD1 LST1 ZBTB12 LY6G6C CLIC1 LY6G5C GPSM3 PRRC2A SNORD117 SAPCD1 SNORD52 AIF1 EGFL8 HLA-B SNORD84 NFKBIL1 MIR6721 ABHD16A C2 CFB C6orf25 MIR6891 MIR6833 BAG6 HLA-DRA SKIV2L C4A NEU1 APOM CYP21A2

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More Information


Additional Information:

For this assay, SNP(s) [rs149215209] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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