Hs02984327_cn

• Gene Symbol: CLEC5A
• Assay Reference Genome Location: Chr.7:141929881 on build GRCh38
• Cytoband: 7q34

Target Gene Details

• Entrez Gene ID: 23601
• Gene Name: C-type lectin domain family 5 member A
• Gene Aliases: CLECSF5, MDL-1, MDL1
• Location: Chr.7:141927356-141947009 on Build GRCh38
• Assay Gene Location: Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CLEC5A	NM_001301167.1	6	942	NP_001288096.1
	NM_013252.2	7	987	NP_037384.1
	XM_011515995.2	5	874	XP_011514297.1
	XM_017011915.1	6	945	XP_016867404.1
	XM_017011917.1	6	940	XP_016867406.1
	AF139768.1			AAF02491.1
	AJ271684.1	7	987	CAB71334.1
	AK292766.1
	AK295200.1	6	879
	AK307095.1	5	805

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv831161	Chr.7:141847054 - 142010406 on Build GRCh38	Loss	OR9A1P CLEC5A MGAM OR9A4 PRSS37 TAS2R38
nsv5974	Chr.7:141902519 - 141943197 on Build GRCh38	Deletion	CLEC5A OR9A4

More Information

Additional Information:

For this assay, SNP(s) [rs73525919] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

osteoblast development
cellular defense response
signal transduction
myeloid cell differentiation
negative regulation of myeloid cell apoptotic process
negative regulation of apoptotic process
innate immune response
viral entry into host cell
positive regulation of cytokine secretion

Function(s)

virus receptor activity
carbohydrate binding