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See other AGER CNV Assays ›
Gene Symbol
AGER
Assay Reference Genome
Location

Chr.6:32183578 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03014002_cn
Size
Availability Made To Order
Catalog # 4400291
Price 457.00
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Assay Details

Target Gene Details

Entrez Gene ID:

 177

Gene Name:

 advanced glycosylation end product-specific receptor

Gene Aliases:

 RAGE, SCARJ1

Location:

 Chr.6:32180968-32185247 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGER NM_001136.4 NP_001127.1
NM_001206929.1 NP_001193858.1
NM_001206932.1 NP_001193861.1
NM_001206934.1 NP_001193863.1
NM_001206936.1 NP_001193865.1
NM_001206940.1 NP_001193869.1
NM_001206954.1 NP_001193883.1
NM_001206966.1 NP_001193895.1
NM_172197.2 NP_751947.1
NR_038190.1
XM_017010328.1 XP_016865817.1
AB036432.1 BAA89369.1
AB061668.1 BAC65465.1
AB061669.1 BAC65466.1
AJ133822.1 CAB43108.1
AK298100.1
AK313178.1
AY755619.1 AAX07272.1
AY755620.1 AAX07273.1
AY755621.1 AAX07274.1
AY755622.1 AAX07275.1
AY755623.1 AAX07276.1
AY755624.1 AAX07277.1
AY755625.1 AAX07278.1
AY755626.1 AAX07279.1
AY755627.1 AAX07280.1
AY755628.1 AAX07281.1
BC020669.1 AAH20669.1
DQ104251.1
DQ104252.1
DQ104253.1
DQ104254.1
EU117141.1
EU428811.1
EU428812.1
EU428813.1
EU428814.1
EU428815.1
EU428816.1
EU826616.1 3 332
EU826617.1
EU826618.1
EU826619.1
EU826620.1
FJ545655.1
GU139370.1
GU139371.1
GU139372.1
GU139373.1
GU139374.1
GU139375.1
GU139376.1
GU139377.1
GU139378.1
GU139379.1
GU139380.1
GU139381.1
GU139382.1
GU139383.1
GU139384.1
HQ148133.1
HQ148134.1
HQ148135.1
KC692917.1
M91211.1 AAA03574.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PBX2 AGPAT1 NOTCH4 GPSM3 LOC100507547 MIR6721 PRRT1 PPT2-EGFL8 FKBPL MIR6833 ATF6B TNXB EGFL8 RNF5 AGER PPT2
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss TNXA PBX2 AGPAT1 LOC100507547 HCG23 C4A HLA-DQB1 C4B HLA-DRA CYP21A2 ATF6B HLA-DRB1 HLA-DRB6 HLA-DQB1-AS1 CYP21A1P PPT2 HLA-DQA1 NOTCH4 HLA-DQB2 GPSM3 MIR6721 MIR3135B PRRT1 PPT2-EGFL8 FKBPL MIR6833 C6orf10 HLA-DRB5 TNXB EGFL8 BTNL2 LOC101929163 RNF5 HLA-DQA2 AGER
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss TNXA PBX2 SNORD48 C4A EHMT2 C4B C2-AS1 ATF6B HLA-DRB6 C2 NELFE DXO CYP21A1P PPT2 HLA-DQA1 GPSM3 MIR6721 SLC44A4 NEU1 SNORD52 PPT2-EGFL8 MIR6833 SKIV2L HLA-DRB5 TNXB EGFL8 LOC101929163 HSPA1A ZBTB12 AGPAT1 LOC100507547 HCG23 HLA-DQB1 HLA-DRA CYP21A2 MIR1236 HLA-DRB1 HLA-DQB1-AS1 STK19 CFB NOTCH4 PRRT1 FKBPL C6orf48 C6orf10 BTNL2 RNF5 AGER HSPA1B
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss TNXA PBX2 AGPAT1 LOC100507547 C4A C4B CYP21A2 MIR1236 C2-AS1 ATF6B C2 NELFE DXO CYP21A1P PPT2 STK19 CFB NOTCH4 GPSM3 MIR6721 PRRT1 PPT2-EGFL8 FKBPL MIR6833 SKIV2L TNXB EGFL8 RNF5 AGER
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion TNXA PBX2 SNORD48 PRRC2A C4A SNORA38 EHMT2 C4B SAPCD1-AS1 LY6G5C C2-AS1 DDAH2 ATF6B LY6G6D LY6G5B HLA-DRB6 C2 MICB VARS C6orf25 NELFE HCG26 DXO CYP21A1P ATP6V1G2-DDX39B PPT2 SNORD117 LY6G6E CLIC1 LOC102725068 GPSM3 NFKBIL1 HSPA1L MIR6721 SLC44A4 NEU1 MIR4646 LY6G6F SNORD52 ABHD16A PPT2-EGFL8 HCP5 MIR6833 SKIV2L HLA-DRB5 TNXB EGFL8 LOC101929163 HSPA1A VWA7 SNORD84 LOC100287329 ZBTB12 AGPAT1 CSNK2B APOM LTB LOC100507547 HCG23 TNF DDX39B HLA-DRA MSH5 CYP21A2 MIR1236 HLA-DRB1 LST1 MCCD1 STK19 NCR3 ATP6V1G2 CFB NOTCH4 MSH5-SAPCD1 C6orf47 LSM2 PRRT1 FKBPL C6orf48 BAG6 LY6G6C C6orf10 MIR6832 LTA BTNL2 GPANK1 SAPCD1 DDX39B-AS1 RNF5 AGER AIF1 HSPA1B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion PSMB8 SNORD48 PRRC2A SAPCD1-AS1 COL11A2 C2-AS1 TAPBP LY6G6D LY6G5B HLA-DRB6 C2 NELFE HCG26 ATP6V1G2-DDX39B HLA-DQA1 MIR219A1 CLIC1 MIR5004 HSPA1L SLC44A4 SNORD52 ABHD16A HCP5 WDR46 RXRB RGL2 HLA-DRB5 TNXB EGFL8 HSPA1A HLA-DPB2 HCG25 ZBTB12 CSNK2B LTB HCG23 HLA-DQB1 PPP1R2P1 MSH5 MIR1236 HLA-DRB1 HLA-DQB1-AS1 ZBTB9 VPS52 STK19 NCR3 CUTA HLA-DOB NOTCH4 HLA-DQB2 LOC100294145 LSM2 SLC39A7 MIR3135B PRRT1 PSMB8-AS1 BAG6 LY6G6C HLA-DPA1 MIR6832 GPANK1 SAPCD1 DDX39B-AS1 RNF5 ZBTB22 AGER AIF1 PFDN6 HLA-DPB1 TNXA PBX2 TAP1 C4A SNORA38 EHMT2 C4B LY6G5C MIR6834 DDAH2 ATF6B HSD17B8 MICB VARS C6orf25 B3GALT4 KIFC1 DXO CYP21A1P PPT2 SNORD117 LY6G6E LOC102725068 GPSM3 RING1 NFKBIL1 MIR6721 NEU1 MIR4646 LY6G6F DAXX PPT2-EGFL8 MIR6833 SKIV2L BRD2 LOC101929163 VWA7 SNORD84 SYNGAP1 LOC100287329 AGPAT1 APOM LOC100507547 TNF TAP2 HLA-DMA DDX39B HLA-DRA PHF1 HLA-DOA CYP21A2 LST1 MCCD1 ATP6V1G2 CFB RPS18 MIR6873 MSH5-SAPCD1 C6orf47 PSMB9 HLA-DMB FKBPL C6orf48 C6orf10 HCG24 LTA BTNL2 HLA-DQA2 HSPA1B
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PBX2 AGPAT1 NOTCH4 GPSM3 LOC100507547 MIR6721 PRRT1 PPT2-EGFL8 FKBPL MIR6833 ATF6B TNXB EGFL8 RNF5 AGER PPT2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion PSMB8 SNORD48 PRRC2A SAPCD1-AS1 COL11A2 C2-AS1 TAPBP LY6G6D LY6G5B HLA-DRB6 C2 NELFE HCG26 ATP6V1G2-DDX39B HLA-DQA1 MIR219A1 CLIC1 MIR5004 HSPA1L SLC44A4 SNORD52 ABHD16A HCP5 WDR46 RXRB RGL2 HLA-DRB5 TNXB EGFL8 HSPA1A HLA-DPB2 HCG25 ZBTB12 CSNK2B LTB HCG23 HLA-DQB1 PPP1R2P1 MSH5 MIR1236 HLA-DRB1 HLA-DQB1-AS1 ZBTB9 VPS52 STK19 NCR3 CUTA HLA-DOB NOTCH4 HLA-DQB2 LOC100294145 LSM2 SLC39A7 MIR3135B PRRT1 PSMB8-AS1 BAG6 LY6G6C HLA-DPA1 MIR6832 GPANK1 SAPCD1 DDX39B-AS1 RNF5 ZBTB22 AGER AIF1 PFDN6 HLA-DPB1 TNXA PBX2 TAP1 C4A SNORA38 EHMT2 C4B LY6G5C MIR6834 DDAH2 ATF6B HSD17B8 MICB VARS C6orf25 B3GALT4 KIFC1 DXO CYP21A1P PPT2 SNORD117 LY6G6E LOC102725068 GPSM3 RING1 NFKBIL1 MIR6721 NEU1 MIR4646 LY6G6F DAXX PPT2-EGFL8 MIR6833 SKIV2L BRD2 LOC101929163 VWA7 SNORD84 SYNGAP1 LOC100287329 AGPAT1 APOM LOC100507547 TNF TAP2 HLA-DMA DDX39B HLA-DRA PHF1 HLA-DOA CYP21A2 LST1 MCCD1 ATP6V1G2 CFB RPS18 MIR6873 MSH5-SAPCD1 C6orf47 PSMB9 HLA-DMB FKBPL C6orf48 C6orf10 HCG24 LTA BTNL2 HLA-DQA2 HSPA1B
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MICA TNXA PBX2 HLA-B SNORD48 PRRC2A C4A SNORA38 EHMT2 C4B SAPCD1-AS1 LY6G5C C2-AS1 DDAH2 ATF6B LY6G6D LY6G5B C2 MICB VARS C6orf25 NELFE HCG26 DXO CYP21A1P ATP6V1G2-DDX39B PPT2 SNORD117 LY6G6E CLIC1 LOC102725068 GPSM3 NFKBIL1 HSPA1L MIR6721 SLC44A4 NEU1 MIR4646 LY6G6F SNORD52 ABHD16A PPT2-EGFL8 HCP5 MIR6833 SKIV2L TNXB EGFL8 LOC101929163 HSPA1A VWA7 SNORD84 LOC100287329 ZBTB12 AGPAT1 CSNK2B APOM LTB LOC100507547 HCG23 TNF DDX39B HLA-DRA MSH5 CYP21A2 MIR1236 LST1 MCCD1 STK19 NCR3 ATP6V1G2 CFB NOTCH4 MSH5-SAPCD1 C6orf47 LSM2 PRRT1 FKBPL C6orf48 BAG6 MIR6891 LY6G6C C6orf10 MIR6832 LTA BTNL2 GPANK1 SAPCD1 DDX39B-AS1 RNF5 AGER AIF1 HSPA1B

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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