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See other TNFRSF4 CNV Assays ›
Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1212883 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03339447_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542074.2 XP_011540376.1
XM_011542075.2 XP_011540377.1
XM_011542076.2 XP_011540378.1
XM_011542077.2 XP_011540379.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MIR6859-2 HES4 KLHL17 ISG15 LOC100133331 LINC01128 LOC107985728 TMEM52 LOC105378591 B3GALT6 SLC35E2B MIR6727 GNB1 MXRA8 LOC148413 MRPL20 MIR6723 AURKAIP1 FAM132A SLC35E2 MMP23A NADK LOC284600 CALML6 RNF223 ANKRD65 MORN1 LOC100288175 MIR1302-2 UBE2J2 LOC100287934 ATAD3B LOC105378589 OR4F29 WASH7P FAM138A LOC100134822 LINC00115 TMEM88B SCNN1D ACAP3 MIB2 FAAP20 ATAD3C OR4F5 MIR6859-1 TAS1R3 MIR200B LOC105378592 LINC01342 LOC100288069 ATAD3A LOC105378949 FNDC10 FAM87B MMP23B LOC102724312 TTLL10 VWA1 SAMD11 PERM1 SKI MTND1P23 MIR429 CDK11B MTND2P28 LOC105378947 OR4F16 C1orf159 SDF4 LOC102725121 TNFRSF4 PRKCZ LOC100132287 TTLL10-AS1 MIR6808 GABRD LOC107984841 CPSF3L CFAP74 LOC100506504 CPTP LOC107985729 MIR200A TMEM240 CCNL2 LOC105378948 LOC101928626 LOC100130417 DDX11L1 PLEKHN1 MIR6726 DVL1 FAM41C LOC729737 AGRN PUSL1 TNFRSF18 LOC100129534 CDK11A SSU72 NOC2L
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain C1orf159 TTLL10 SDF4 RNF223 SCNN1D TNFRSF4 TTLL10-AS1 TNFRSF18 FAM132A MIR200B MIR200A UBE2J2 B3GALT6 MIR429 LINC01342 LOC105378948
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss C1orf159 MIR6726 TTLL10 SDF4 RNF223 SCNN1D TNFRSF4 ACAP3 TTLL10-AS1 TNFRSF18 FAM132A MIR200B MIR200A UBE2J2 B3GALT6 MIR429 LINC01342
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF18 TTLL10 B3GALT6 SDF4 TNFRSF4 TTLL10-AS1
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TTLL10 HES4 KLHL17 ISG15 RNF223 SAMD11 PERM1 LOC107985728 LOC100288175 MIR200A MIR429 LOC105378948 LOC100130417 PLEKHN1 C1orf159 FAM41C SDF4 AGRN TNFRSF4 TTLL10-AS1 TNFRSF18 MIR200B LINC01342 LOC284600 NOC2L
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TTLL10 RNF223 CPTP LOC100288175 MIR200A UBE2J2 B3GALT6 MIR429 MIR6727 LOC105378948 C1orf159 MIR6726 SDF4 AGRN SCNN1D TNFRSF4 ACAP3 TAS1R3 TTLL10-AS1 PUSL1 TNFRSF18 FAM132A MIR200B LINC01342 CPSF3L
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss FAM87B MMP23B LOC102724312 TTLL10 HES4 KLHL17 VWA1 ISG15 SAMD11 LINC01128 PERM1 LOC107985728 B3GALT6 MIR429 SLC35E2B MIR6727 CDK11B MXRA8 LOC148413 C1orf159 MRPL20 SDF4 TNFRSF4 AURKAIP1 TTLL10-AS1 MIR6808 FAM132A SLC35E2 MMP23A NADK LOC284600 CPSF3L RNF223 ANKRD65 CPTP LOC107985729 LOC100288175 MIR200A TMEM240 CCNL2 UBE2J2 LOC100287934 LOC105378948 ATAD3B LOC100130417 PLEKHN1 MIR6726 DVL1 FAM41C LINC00115 TMEM88B AGRN SCNN1D ACAP3 MIB2 ATAD3C TAS1R3 PUSL1 TNFRSF18 MIR200B CDK11A SSU72 LINC01342 LOC100288069 NOC2L ATAD3A FNDC10
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss FAM87B TTLL10 HES4 KLHL17 ISG15 RNF223 SAMD11 LINC01128 PERM1 LOC107985728 LOC100288175 MIR200A UBE2J2 B3GALT6 MIR429 LOC105378948 LOC100130417 PLEKHN1 C1orf159 FAM41C LINC00115 SDF4 AGRN TNFRSF4 TTLL10-AS1 TNFRSF18 FAM132A MIR200B LINC01342 LOC284600 NOC2L
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MMP23B LOC102724312 TTLL10 VWA1 ANKRD65 CPTP LOC107985729 MIR200A TMEM240 CCNL2 UBE2J2 B3GALT6 MIR429 MIR6727 CDK11B MXRA8 ATAD3B LOC148413 C1orf159 MIR6726 DVL1 MRPL20 SDF4 TMEM88B SCNN1D TNFRSF4 ACAP3 MIB2 ATAD3C AURKAIP1 TAS1R3 TTLL10-AS1 MIR6808 PUSL1 TNFRSF18 FAM132A MIR200B SSU72 LINC01342 CPSF3L ATAD3A FNDC10
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TTLL10 HES4 KLHL17 ISG15 RNF223 ANKRD65 SAMD11 CPTP PERM1 LOC107985728 LOC100288175 MIR200A CCNL2 UBE2J2 B3GALT6 MIR429 MIR6727 MXRA8 LOC105378948 LOC100130417 PLEKHN1 LOC148413 C1orf159 MIR6726 DVL1 MRPL20 SDF4 TMEM88B AGRN SCNN1D TNFRSF4 ACAP3 AURKAIP1 TAS1R3 TTLL10-AS1 MIR6808 PUSL1 TNFRSF18 FAM132A MIR200B LINC01342 LOC284600 NOC2L CPSF3L
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PLEKHN1 C1orf159 TTLL10 HES4 KLHL17 ISG15 SDF4 RNF223 AGRN TNFRSF4 SAMD11 TTLL10-AS1 PERM1 TNFRSF18 MIR200B LOC100288175 MIR200A MIR429 LINC01342 NOC2L LOC105378948
dgv24n54 Chr.1:1205055 - 1213515 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR6726 TTLL10 SDF4 SCNN1D TNFRSF4 ACAP3 TTLL10-AS1 PUSL1 TNFRSF18 FAM132A MIR200B MIR200A UBE2J2 B3GALT6 MIR429 MIR6727 CPSF3L

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