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See other TNFRSF4 CNV Assays ›
Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1212883 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03339447_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542074.2 XP_011540376.1
XM_011542075.2 XP_011540377.1
XM_011542076.2 XP_011540378.1
XM_011542077.2 XP_011540379.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100288175 OR4F29 ACAP3 SLC35E2B LOC107984841 RNF223 B3GALT6 TMEM240 LOC107985729 MTND1P23 MIR6808 CDK11A MIR6859-2 MIR6727 MIR200B WASH7P CPTP TTLL10 LOC148413 MIR429 ATAD3C LOC105378589 VWA1 TMEM88B LOC105378947 GNB1 MRPL20 KLHL17 LOC105378948 TTLL10-AS1 LOC100134822 CCNL2 LOC100132287 PERM1 MIB2 C1orf159 ATAD3A SDF4 ISG15 TNFRSF4 CALML6 SAMD11 FAM132A MXRA8 MIR1302-2 PUSL1 ATAD3B LOC105378949 MMP23B LOC105378591 DDX11L1 AGRN FAM138A OR4F16 DVL1 MIR6726 CPSF3L MIR200A NADK GABRD UBE2J2 LINC00115 LINC01128 PRKCZ SKI CFAP74 LOC100287934 FAAP20 LOC100130417 CDK11B LOC101928626 FAM41C TAS1R3 LOC102725121 FAM87B LOC100506504 LOC100288069 MTND2P28 SCNN1D TMEM52 SLC35E2 AURKAIP1 LOC100133331 LOC729737 MIR6723 TNFRSF18 LOC105378592 HES4 LOC107985728 MMP23A MIR6859-1 NOC2L ANKRD65 LINC01342 FNDC10 OR4F5 SSU72 LOC100129534 LOC284600 LOC102724312 PLEKHN1 MORN1
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR429 MIR200A C1orf159 UBE2J2 SDF4 RNF223 LINC01342 B3GALT6 TNFRSF18 TNFRSF4 LOC105378948 TTLL10-AS1 MIR200B FAM132A TTLL10 SCNN1D
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss AURKAIP1 MIR200A ACAP3 C1orf159 UBE2J2 SDF4 RNF223 B3GALT6 TNFRSF18 TNFRSF4 MIR6808 MIR6727 MIR200B FAM132A CPTP TTLL10 MXRA8 PUSL1 MIR429 TAS1R3 LINC01342 TTLL10-AS1 DVL1 MIR6726 CPSF3L SCNN1D
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 SDF4 B3GALT6 TTLL10 TNFRSF18 TNFRSF4
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC100288175 MIR200A ACAP3 C1orf159 UBE2J2 SDF4 RNF223 B3GALT6 TNFRSF18 TNFRSF4 MIR6727 MIR200B FAM132A CPTP TTLL10 PUSL1 MIR429 TAS1R3 LINC01342 AGRN LOC105378948 TTLL10-AS1 MIR6726 CPSF3L SCNN1D
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC100288175 PERM1 MIR200A C1orf159 SDF4 ISG15 RNF223 TNFRSF18 TNFRSF4 SAMD11 HES4 MIR200B LOC107985728 TTLL10 MIR429 LOC100130417 FAM41C NOC2L LINC01342 AGRN KLHL17 LOC284600 LOC105378948 TTLL10-AS1 PLEKHN1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100288175 MIR200A ACAP3 SLC35E2B NADK UBE2J2 LINC00115 LINC01128 RNF223 B3GALT6 TMEM240 LOC107985729 MIR6808 CDK11A MIR6727 MIR200B CPTP TTLL10 LOC148413 MIR429 LOC100287934 LOC100130417 ATAD3C CDK11B FAM41C VWA1 TMEM88B TAS1R3 FAM87B MRPL20 KLHL17 LOC100288069 LOC105378948 TTLL10-AS1 CCNL2 SCNN1D SLC35E2 AURKAIP1 PERM1 MIB2 C1orf159 ATAD3A SDF4 ISG15 TNFRSF18 TNFRSF4 SAMD11 HES4 FAM132A LOC107985728 MXRA8 PUSL1 ATAD3B MMP23B MMP23A NOC2L ANKRD65 LINC01342 AGRN FNDC10 SSU72 LOC284600 DVL1 LOC102724312 MIR6726 PLEKHN1 CPSF3L
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion AURKAIP1 MIR200A MIB2 ACAP3 C1orf159 UBE2J2 ATAD3A SDF4 B3GALT6 TMEM240 TNFRSF18 TNFRSF4 LOC107985729 MIR6808 MIR6727 MIR200B FAM132A CPTP TTLL10 LOC148413 MXRA8 PUSL1 MIR429 ATAD3B MMP23B ATAD3C CDK11B VWA1 TMEM88B TAS1R3 ANKRD65 LINC01342 FNDC10 MRPL20 SSU72 TTLL10-AS1 DVL1 LOC102724312 MIR6726 CPSF3L CCNL2 SCNN1D
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100288175 PERM1 MIR200A C1orf159 UBE2J2 LINC00115 LINC01128 SDF4 ISG15 RNF223 B3GALT6 TNFRSF18 TNFRSF4 SAMD11 HES4 MIR200B FAM132A LOC107985728 TTLL10 MIR429 LOC100130417 FAM41C NOC2L FAM87B LINC01342 AGRN KLHL17 LOC284600 LOC105378948 TTLL10-AS1 PLEKHN1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LOC100288175 MIR429 PERM1 MIR200A C1orf159 SDF4 NOC2L ISG15 RNF223 LINC01342 AGRN TNFRSF18 TNFRSF4 KLHL17 LOC105378948 TTLL10-AS1 SAMD11 HES4 MIR200B PLEKHN1 TTLL10
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC100288175 AURKAIP1 PERM1 MIR200A ACAP3 C1orf159 UBE2J2 SDF4 ISG15 RNF223 B3GALT6 TNFRSF18 TNFRSF4 MIR6808 SAMD11 MIR6727 HES4 MIR200B FAM132A CPTP LOC107985728 TTLL10 LOC148413 MXRA8 PUSL1 MIR429 LOC100130417 TMEM88B TAS1R3 NOC2L ANKRD65 LINC01342 AGRN MRPL20 KLHL17 LOC284600 LOC105378948 TTLL10-AS1 DVL1 MIR6726 PLEKHN1 CPSF3L CCNL2 SCNN1D
dgv24n54 Chr.1:1205055 - 1213515 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR429 MIR200A ACAP3 UBE2J2 SDF4 B3GALT6 TNFRSF18 TNFRSF4 TTLL10-AS1 MIR6727 MIR200B FAM132A MIR6726 TTLL10 CPSF3L SCNN1D PUSL1

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