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See other TNFRSF18 CNV Assays ›
Gene Symbol
TNFRSF18
Assay Reference Genome
Location

Chr.1:1205923 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03360931_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 8784

Gene Name:

 TNF receptor superfamily member 18

Gene Aliases:

 AITR, CD357, GITR, GITR-D

Location:

 Chr.1:1203508-1207900 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF18 NM_004195.2 NP_004186.1
NM_148901.1 NP_683699.1
NM_148902.1 NP_683700.1
XM_017002722.1 XP_016858211.1
AF117297.1 AAD19694.1
AF125304.1 AAD22635.1
AF241229.1 AAF63506.1
AY358877.1 AAQ89236.1
BC152381.1
BC152386.1
BT019531.1 AAV38338.1
BT019532.1 AAV38339.1
KP067911.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CPSF3L MIR6723 ATAD3B MIR6808 SLC35E2B TNFRSF4 CDK11A MTND1P23 FAM41C LOC100506504 FAM132A LOC102724312 NOC2L PLEKHN1 SLC35E2 RNF223 LOC100129534 SSU72 DVL1 LINC01128 FAM87B GABRD C1orf159 CDK11B MIR6726 LOC284600 LOC107985729 NADK CPTP TMEM240 MXRA8 MORN1 LOC107985728 SAMD11 LOC105378592 OR4F5 FAAP20 UBE2J2 CALML6 LOC105378589 LOC107984841 TAS1R3 AGRN MRPL20 SDF4 TTLL10 MTND2P28 OR4F16 OR4F29 MIB2 ATAD3A LOC148413 TTLL10-AS1 SCNN1D ANKRD65 TMEM52 TMEM88B MIR6727 LOC100288175 LOC102725121 PERM1 ACAP3 LOC100134822 LOC729737 MIR6859-1 LOC100130417 MIR429 GNB1 CCNL2 LINC00115 LOC100287934 DDX11L1 KLHL17 B3GALT6 CFAP74 PUSL1 ISG15 MMP23A MIR6859-2 LOC100288069 VWA1 FNDC10 MIR200B LOC100133331 SKI AURKAIP1 FAM138A HES4 LOC105378591 LINC01342 MIR1302-2 LOC101928626 LOC100132287 LOC105378948 TNFRSF18 PRKCZ MIR200A MMP23B LOC105378947 LOC105378949 ATAD3C WASH7P
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LOC105378948 RNF223 SCNN1D TNFRSF18 SDF4 MIR429 TTLL10 MIR200B C1orf159 TNFRSF4 B3GALT6 MIR200A UBE2J2 FAM132A LINC01342 TTLL10-AS1
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss RNF223 SCNN1D TNFRSF18 SDF4 MIR429 TTLL10 MIR200B C1orf159 TNFRSF4 B3GALT6 MIR6726 MIR200A UBE2J2 ACAP3 FAM132A LINC01342 TTLL10-AS1
nsv544960 Chr.1:1204036 - 1207482 on Build GRCh38 Loss TNFRSF18
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF4 B3GALT6 TNFRSF18 SDF4 TTLL10 TTLL10-AS1
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC107985728 SAMD11 MIR200B LOC100288175 TNFRSF4 FAM41C PERM1 NOC2L HES4 PLEKHN1 LINC01342 LOC105378948 RNF223 LOC100130417 AGRN TNFRSF18 SDF4 MIR429 TTLL10 C1orf159 KLHL17 MIR200A ISG15 LOC284600 TTLL10-AS1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication CPSF3L SCNN1D MIR200B MIR6727 LOC100288175 TNFRSF4 UBE2J2 ACAP3 FAM132A LINC01342 LOC105378948 RNF223 TAS1R3 AGRN TNFRSF18 SDF4 MIR429 TTLL10 C1orf159 B3GALT6 MIR6726 MIR200A PUSL1 CPTP TTLL10-AS1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CPSF3L SCNN1D ATAD3B ANKRD65 TMEM88B MIR6808 MIR6727 LOC100288175 SLC35E2B TNFRSF4 CDK11A FAM41C PERM1 ACAP3 FAM132A LOC102724312 NOC2L PLEKHN1 SLC35E2 RNF223 LOC100130417 SSU72 DVL1 LINC01128 MIR429 FAM87B CCNL2 LINC00115 LOC100287934 C1orf159 CDK11B KLHL17 B3GALT6 MIR6726 PUSL1 ISG15 LOC284600 LOC107985729 MMP23A NADK CPTP LOC100288069 TMEM240 MXRA8 LOC107985728 SAMD11 VWA1 FNDC10 MIR200B UBE2J2 AURKAIP1 HES4 LINC01342 LOC105378948 TAS1R3 AGRN TNFRSF18 MRPL20 SDF4 TTLL10 MIR200A MMP23B ATAD3C MIB2 ATAD3A LOC148413 TTLL10-AS1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC107985728 SAMD11 MIR200B LOC100288175 TNFRSF4 FAM41C PERM1 UBE2J2 FAM132A NOC2L HES4 PLEKHN1 LINC01342 LOC105378948 RNF223 LOC100130417 AGRN TNFRSF18 LINC01128 SDF4 MIR429 FAM87B LINC00115 TTLL10 C1orf159 KLHL17 B3GALT6 MIR200A ISG15 LOC284600 TTLL10-AS1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion CPSF3L MXRA8 SCNN1D VWA1 ATAD3B ANKRD65 FNDC10 TMEM88B MIR6808 MIR200B MIR6727 TNFRSF4 UBE2J2 ACAP3 AURKAIP1 FAM132A LOC102724312 LINC01342 TAS1R3 SSU72 DVL1 TNFRSF18 MRPL20 SDF4 MIR429 CCNL2 TTLL10 C1orf159 CDK11B B3GALT6 MIR6726 MIR200A PUSL1 MMP23B ATAD3C LOC107985729 MIB2 ATAD3A CPTP TMEM240 LOC148413 TTLL10-AS1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain CPSF3L MXRA8 SCNN1D LOC107985728 SAMD11 ANKRD65 TMEM88B MIR6808 MIR200B MIR6727 LOC100288175 TNFRSF4 PERM1 UBE2J2 ACAP3 AURKAIP1 FAM132A NOC2L HES4 PLEKHN1 LINC01342 LOC105378948 RNF223 LOC100130417 TAS1R3 AGRN DVL1 TNFRSF18 MRPL20 SDF4 MIR429 CCNL2 TTLL10 C1orf159 KLHL17 B3GALT6 MIR6726 MIR200A PUSL1 ISG15 LOC284600 CPTP LOC148413 TTLL10-AS1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LOC105378948 RNF223 SAMD11 AGRN TNFRSF18 SDF4 MIR429 TTLL10 MIR200B C1orf159 LOC100288175 TNFRSF4 KLHL17 MIR200A ISG15 PERM1 NOC2L HES4 PLEKHN1 LINC01342 TTLL10-AS1
dgv24n54 Chr.1:1205055 - 1213515 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L SCNN1D TNFRSF18 SDF4 MIR429 TTLL10 MIR200B MIR6727 TNFRSF4 B3GALT6 MIR6726 MIR200A PUSL1 UBE2J2 ACAP3 FAM132A TTLL10-AS1

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