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See other TNFRSF18 CNV Assays ›
Gene Symbol
TNFRSF18
Assay Reference Genome
Location

Chr.1:1205923 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03360931_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 8784

Gene Name:

 TNF receptor superfamily member 18

Gene Aliases:

 AITR, CD357, GITR, GITR-D

Location:

 Chr.1:1203508-1207900 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF18 NM_004195.2 NP_004186.1
NM_148901.1 NP_683699.1
NM_148902.1 NP_683700.1
XM_017002722.1 XP_016858211.1
AF117297.1 AAD19694.1
AF125304.1 AAD22635.1
AF241229.1 AAF63506.1
AY358877.1 AAQ89236.1
BC152381.1
BC152386.1
BT019531.1 AAV38338.1
BT019532.1 AAV38339.1
KP067911.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC107985728 TAS1R3 CPSF3L LOC100134822 LOC100130417 UBE2J2 NADK MIR6859-1 ATAD3C LOC102724312 MIR1302-2 PUSL1 DVL1 OR4F29 MIR6808 MIB2 LINC00115 TNFRSF18 CFAP74 LOC729737 LINC01342 MMP23B LOC105378948 TMEM52 LOC100287934 WASH7P CDK11A MTND1P23 FAM138A GNB1 B3GALT6 OR4F5 HES4 GABRD LOC100506504 LOC100133331 PRKCZ FAM87B LOC107985729 CDK11B ATAD3B KLHL17 LINC01128 FAM132A LOC105378589 MIR200A TMEM240 MIR429 LOC100129534 LOC102725121 LOC100288069 PERM1 SKI MIR6727 LOC101928626 TNFRSF4 FAAP20 MMP23A LOC105378949 ACAP3 SAMD11 AURKAIP1 ISG15 MIR6726 TMEM88B LOC284600 CALML6 TTLL10 MRPL20 LOC100132287 VWA1 AGRN CPTP SCNN1D LOC105378592 MIR200B FNDC10 LOC148413 LOC105378947 C1orf159 MORN1 SLC35E2 MIR6859-2 MIR6723 PLEKHN1 NOC2L CCNL2 SDF4 SLC35E2B SSU72 MTND2P28 ATAD3A FAM41C OR4F16 LOC100288175 RNF223 ANKRD65 LOC107984841 MXRA8 LOC105378591 TTLL10-AS1 DDX11L1
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain RNF223 LINC01342 LOC105378948 UBE2J2 SCNN1D SDF4 FAM132A MIR200A MIR200B MIR429 C1orf159 TNFRSF4 B3GALT6 TTLL10 TTLL10-AS1 TNFRSF18
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss ACAP3 TAS1R3 CPSF3L AURKAIP1 UBE2J2 SDF4 MIR6726 FAM132A MIR200A MIR429 PUSL1 DVL1 MIR6808 TTLL10 TNFRSF18 RNF223 LINC01342 CPTP SCNN1D MXRA8 MIR6727 MIR200B C1orf159 TNFRSF4 B3GALT6 TTLL10-AS1
nsv544960 Chr.1:1204036 - 1207482 on Build GRCh38 Loss TNFRSF18
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TNFRSF4 B3GALT6 TTLL10 TTLL10-AS1 SDF4 TNFRSF18
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication ACAP3 TAS1R3 CPSF3L UBE2J2 SDF4 MIR6726 FAM132A MIR200A MIR429 PUSL1 TTLL10 TNFRSF18 AGRN LOC100288175 RNF223 LINC01342 LOC105378948 CPTP SCNN1D MIR6727 MIR200B C1orf159 TNFRSF4 B3GALT6 TTLL10-AS1
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC107985728 PLEKHN1 NOC2L LOC100130417 SAMD11 ISG15 KLHL17 SDF4 MIR200A MIR429 LOC284600 FAM41C TTLL10 TNFRSF18 AGRN LOC100288175 RNF223 PERM1 LINC01342 LOC105378948 MIR200B C1orf159 TNFRSF4 HES4 TTLL10-AS1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC107985728 ACAP3 TAS1R3 CPSF3L LOC100130417 SAMD11 AURKAIP1 UBE2J2 NADK ISG15 ATAD3C LOC102724312 MIR6726 TMEM88B PUSL1 DVL1 LOC284600 MIR6808 MIB2 LINC00115 TTLL10 MRPL20 VWA1 TNFRSF18 AGRN LINC01342 MMP23B LOC105378948 CPTP SCNN1D LOC100287934 MIR200B FNDC10 LOC148413 CDK11A C1orf159 B3GALT6 HES4 SLC35E2 PLEKHN1 FAM87B NOC2L LOC107985729 CDK11B CCNL2 ATAD3B KLHL17 SDF4 LINC01128 FAM132A MIR200A TMEM240 SLC35E2B SSU72 MIR429 ATAD3A FAM41C LOC100288175 LOC100288069 RNF223 ANKRD65 PERM1 MXRA8 MIR6727 TNFRSF4 TTLL10-AS1 MMP23A
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ACAP3 TAS1R3 CPSF3L LOC107985729 CDK11B CCNL2 AURKAIP1 UBE2J2 ATAD3B ATAD3C SDF4 LOC102724312 MIR6726 FAM132A TMEM88B MIR200A TMEM240 SSU72 MIR429 PUSL1 ATAD3A DVL1 MIR6808 MIB2 TTLL10 MRPL20 VWA1 TNFRSF18 ANKRD65 LINC01342 MMP23B CPTP SCNN1D MXRA8 MIR6727 MIR200B FNDC10 LOC148413 C1orf159 TNFRSF4 B3GALT6 TTLL10-AS1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC107985728 PLEKHN1 FAM87B NOC2L LOC100130417 SAMD11 UBE2J2 ISG15 KLHL17 SDF4 LINC01128 FAM132A MIR200A MIR429 LOC284600 FAM41C LINC00115 TTLL10 TNFRSF18 AGRN LOC100288175 RNF223 PERM1 LINC01342 LOC105378948 MIR200B C1orf159 TNFRSF4 B3GALT6 HES4 TTLL10-AS1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion AGRN PLEKHN1 LOC100288175 RNF223 NOC2L PERM1 LINC01342 LOC105378948 SAMD11 ISG15 KLHL17 SDF4 MIR200A MIR200B MIR429 C1orf159 TNFRSF4 HES4 TTLL10 TTLL10-AS1 TNFRSF18
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC107985728 ACAP3 PLEKHN1 TAS1R3 CPSF3L NOC2L LOC100130417 SAMD11 CCNL2 AURKAIP1 UBE2J2 ISG15 KLHL17 SDF4 MIR6726 FAM132A TMEM88B MIR200A MIR429 PUSL1 DVL1 LOC284600 MIR6808 TTLL10 MRPL20 TNFRSF18 AGRN LOC100288175 RNF223 ANKRD65 PERM1 LINC01342 LOC105378948 CPTP SCNN1D MXRA8 MIR6727 MIR200B LOC148413 C1orf159 TNFRSF4 B3GALT6 HES4 TTLL10-AS1
dgv24n54 Chr.1:1205055 - 1213515 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain ACAP3 CPSF3L UBE2J2 SCNN1D SDF4 MIR6726 FAM132A MIR200A MIR6727 MIR200B MIR429 PUSL1 TNFRSF4 B3GALT6 TTLL10 TTLL10-AS1 TNFRSF18

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