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See other ARF1 CNV Assays ›
Gene Symbol
ARF1
Assay Reference Genome
Location

Chr.1:228095100 on build GRCh38
Cytoband
1q42.13
Assay ID Hs03374594_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 375

Gene Name:

 ADP ribosylation factor 1

Gene Aliases:

 -

Location:

 Chr.1:228082660-228099212 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARF1 NM_001024226.1 NP_001019397.1
NM_001024227.1 NP_001019398.1
NM_001024228.1 NP_001019399.1
NM_001658.3 NP_001649.1
XM_017001233.1 XP_016856722.1
AF052179.1 AAC28623.1
AF055002.1 AAC09356.1
AK000620.1
AK057838.1
AK057875.1
AK130737.1
AK293553.1
AK296020.1
AK297792.1
BC009247.2 AAH09247.1
BC010429.1 AAH10429.1
BC011358.1 AAH11358.1
BG421840.1
BM353046.1
BM844480.1
BQ935470.1
BQ949763.1
M36340.1 AAA35552.1
M84326.1 AAA35512.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv826908 Chr.1:227707685 - 228503399 on Build GRCh38 Gain LOC100506571 MRPL55 HIST3H3 MIR3620 TRIM17 LOC105373289 LOC101060022 LOC107985355 C1orf35 IBA57 WNT9A MIR6742 WNT3A IBA57-AS1 HIST3H2BB C1orf145 LOC101927401 ARF1 MIR5008 PRSS38 GJC2 SNAP47 RNF187 OBSCN MIR4666A TRIM11 JMJD4 GUK1 HIST3H2A
nsv1160102 Chr.1:228081212 - 228239280 on Build GRCh38 Deletion MRPL55 OBSCN C1orf145 MIR3620 ARF1 GJC2 IBA57-AS1 GUK1 C1orf35 IBA57
nsv832803 Chr.1:227967417 - 228125980 on Build GRCh38 Loss LOC100506571 MRPL55 MIR3620 ARF1 LOC101060022 WNT3A LOC107985355 C1orf35
esv32853 Chr.1:227692415 - 228670462 on Build GRCh38 Gain LOC100506571 RNA5S14 LOC105373289 LOC107985355 RNA5S13 C1orf35 WNT3A RNA5S3 IBA57-AS1 HIST3H2BB RNA5S12 RNA5S9 RNA5S17 ARF1 MIR5008 PRSS38 GJC2 RNA5S4 SNAP47 RNF187 RNA5S16 OBSCN TRIM11 JMJD4 GUK1 HIST3H2A MRPL55 HIST3H3 MIR3620 TRIM17 RNA5S11 LOC101060022 RNA5S10 IBA57 RNA5S7 WNT9A MIR6742 RNA5S6 C1orf145 LOC101927401 LOC105373132 RNA5S5 RNA5S15 RNA5S1 RHOU RNA5S8 MIR4666A RNA5S2 BTNL10 DUSP5P1
nsv523935 Chr.1:227850423 - 228494048 on Build GRCh38 Loss LOC100506571 MRPL55 HIST3H3 MIR3620 TRIM17 LOC101060022 LOC107985355 C1orf35 IBA57 WNT9A MIR6742 WNT3A IBA57-AS1 HIST3H2BB C1orf145 LOC101927401 ARF1 MIR5008 GJC2 RNF187 OBSCN MIR4666A TRIM11 GUK1 HIST3H2A
nsv516409 Chr.1:227847430 - 228109044 on Build GRCh38 Loss LOC100506571 MRPL55 WNT9A MIR3620 ARF1 MIR5008 LOC101060022 WNT3A LOC107985355 C1orf35
nsv952136 Chr.1:228092800 - 228112199 on Build GRCh38 Deletion MRPL55 MIR3620 ARF1 C1orf35

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More Information


Additional Information:

For this assay, SNP(s) [rs117741092] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

G-protein

Gene Ontology Categories:

Function(s) Process(es)


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