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See other COLEC11 CNV Assays ›
Gene Symbol
COLEC11
Assay Reference Genome
Location

Chr.2:3608109 on build GRCh38
Cytoband
2p25.3
Assay ID Hs03411545_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 78989

Gene Name:

 collectin subfamily member 11

Gene Aliases:

 3MC2, CL-K1-I, CL-K1-II, CL-K1-IIa, CL-K1-IIb, CLK1

Location:

 Chr.2:3594832-3644644 on Build GRCh38

Assay Gene Location:

 Within Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
COLEC11 NM_001255982.1 NP_001242911.1
NM_001255983.1 NP_001242912.1
NM_001255984.1 NP_001242913.1
NM_001255985.1 NP_001242914.1
NM_001255986.1 NP_001242915.1
NM_001255987.1 NP_001242916.1
NM_001255988.1 NP_001242917.1
NM_001255989.1 NP_001242918.1
NM_024027.4 NP_076932.1
NM_199235.2 NP_954705.1
NR_045659.1
XM_005263853.4 XP_005263910.1
XM_006711897.3 XP_006711960.1
AB119525.1
AB119650.1
AB119651.1
AB119652.1
AB119684.1
AB119685.1
AB119686.1
AB119687.1
AK303824.1
AK313840.1
AY358439.1 AAQ88805.1
BC000078.2 AAH00078.1
BC009951.2 AAH09951.1
BF316908.1
BM547424.1
CR936641.1 CAI56781.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv3702n100 Chr.2:3361936 - 3733306 on Build GRCh38 Gain DCDC2C ADI1 TMSB4XP2 RNASEH1-AS1 ALLC RNASEH1 TSSC1 COLEC11 RPS7 LOC100288893 TRAPPC12
nsv468950 Chr.2:3597839 - 3629432 on Build GRCh38 Loss TMSB4XP2 COLEC11
nsv580822 Chr.2:3552110 - 4305551 on Build GRCh38 Gain DCDC2C TMSB4XP2 RNASEH1-AS1 ALLC RNASEH1 LINC01304 COLEC11 RPS7 LOC105373394 LOC105373395

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More Information


Additional Information:

For this assay, SNP(s) [rs115700193] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

surfactant

Gene Ontology Categories:

Function(s) Process(es)


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