Hs03440714_cn

• Gene Symbol: SNTG2
• Assay Reference Genome Location: Chr.2:952771 on build GRCh38
• Cytoband: 2p25.3

Target Gene Details

• Entrez Gene ID: 54221
• Gene Name: syntrophin gamma 2
• Gene Aliases: G2SYN, SYN5
• Location: Chr.2:950868-1367991 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SNTG2	NM_018968.3			NP_061841.2
	XM_017004367.1			XP_016859856.1
	AJ003029.1			CAB92969.1
	BC125251.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv468883	Chr.2:607107 - 1124880 on Build GRCh38	Gain	LOC105373392 TMEM18 LOC101060391 LINC01115 LOC105373480 SNTG2 LOC101060385
nsv580487	Chr.2:872764 - 996975 on Build GRCh38	Loss	LOC101060391 SNTG2 LOC101060385
dgv6598n54	Chr.2:301784 - 1220708 on Build GRCh38	Gain	LOC105373392 LOC105373352 LOC101927362 TMEM18 LOC101060391 LINC01115 LOC105373480 SNTG2 LOC101060385 LOC100996637
nsv998964	Chr.2:847575 - 1104354 on Build GRCh38	Gain	LOC101060391 LINC01115 SNTG2 LOC101060385
nsv1014918	Chr.2:772650 - 1424430 on Build GRCh38	Gain	LOC105373392 TPO LOC101060391 LINC01115 SNTG2 LOC101060385
nsv580488	Chr.2:886378 - 1220708 on Build GRCh38	Gain	LOC101060391 SNTG2 LOC101060385
esv2763522	Chr.2:559913 - 1275684 on Build GRCh38	Gain	LOC105373392 LOC105373352 TMEM18 LOC101060391 LINC01115 LOC105373480 SNTG2 LOC101060385
nsv508768	Chr.2:892077 - 966324 on Build GRCh38	Insertion	LOC101060391 SNTG2 LOC101060385
esv2762237	Chr.2:792179 - 1057783 on Build GRCh38	Gain	LOC101060391 LINC01115 SNTG2 LOC101060385
esv2422306	Chr.2:464320 - 1066079 on Build GRCh38	Duplication	LOC105373392 LOC105373352 LOC101927362 TMEM18 LOC101060391 LINC01115 LOC105373480 SNTG2 LOC101060385 LOC100996637
nsv827908	Chr.2:942199 - 959512 on Build GRCh38	Gain	LOC101060391 SNTG2

More Information

Additional Information:

For this assay, SNP(s) [rs73908610,rs74344539] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

central nervous system development

Function(s)

actin binding
structural molecule activity
PDZ domain binding
neuroligin family protein binding