Hs03447271_cn

• Gene Symbol: COLEC11
• Assay Reference Genome Location: Chr.2:3599825 on build GRCh38
• Cytoband: 2p25.3

Target Gene Details

• Entrez Gene ID: 78989
• Gene Name: collectin subfamily member 11
• Gene Aliases: 3MC2, CL-K1-I, CL-K1-II, CL-K1-IIa, CL-K1-IIb, CLK1
• Location: Chr.2:3594832-3644644 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
COLEC11	NM_001255982.1			NP_001242911.1
	NM_001255983.1			NP_001242912.1
	NM_001255984.1			NP_001242913.1
	NM_024027.4			NP_076932.1
	NM_199235.2			NP_954705.1
	NR_045659.1
	AB119525.1
	AB119650.1
	AB119651.1
	AB119652.1
	AK313840.1
	AY358439.1			AAQ88805.1
	BC000078.2			AAH00078.1
	BC009951.2			AAH09951.1
	BE259985.1
	BF316908.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv3702n100	Chr.2:3361936 - 3733306 on Build GRCh38	Gain	TRAPPC12 ALLC TSSC1 RPS7 RNASEH1-AS1 DCDC2C RNASEH1 COLEC11 ADI1 TMSB4XP2 LOC100288893
nsv468950	Chr.2:3597839 - 3629432 on Build GRCh38	Loss	COLEC11 TMSB4XP2
nsv580822	Chr.2:3552110 - 4305551 on Build GRCh38	Gain	LOC105373395 ALLC LINC01304 RPS7 RNASEH1-AS1 DCDC2C RNASEH1 COLEC11 TMSB4XP2 LOC105373394

More Information

Additional Information:

For this assay, SNP(s) [rs73910596] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

surfactant

Gene Ontology Categories:

Process(es)

proteolysis
receptor-mediated endocytosis
complement activation
multicellular organism development
developmental process

Function(s)

serine-type endopeptidase activity
mannose binding