Genomic Map
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Target Gene Details
Entrez Gene ID: | 116211 |
Gene Name: | transmembrane 4 L six family member 19 |
Gene Aliases: |
OCTM4 |
Location: |
Chr.3:196323546-196338420 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| TM4SF19 | NM_001204897.1 | NP_001191826.1 | ||
| NM_001204898.1 | NP_001191827.1 | |||
| NM_138461.3 | NP_612470.2 | |||
| AF192910.1 | AAQ13824.1 | |||
| AK310209.1 | ||||
| BC146985.1 | ||||
| BC146993.1 | ||||
| BC147021.1 | ||||
| BC171870.1 | ||||
| BQ678650.1 | ||||
| CA430273.1 | ||||
| CA489370.1 | ||||
| DB015357.1 |
Target Gene Details
Entrez Gene ID: | 100534611 |
Gene Name: | TM4SF19-TCTEX1D2 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.3:196316085-196338420 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| TM4SF19-TCTEX1D2 | NR_037950.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv997797 | Chr.3:195931489 - 196486087 on Build GRCh38 | Gain |
 TFRC
UBXN7
TM4SF19
TM4SF19-AS1
UBXN7-AS1
ZDHHC19
SLC51A
TM4SF19-TCTEX1D2
LOC105374301
LINC00885
SDHAP1
TCTEX1D2
PCYT1A
RNF168
|
| nsv1009811 | Chr.3:196124925 - 196411200 on Build GRCh38 | Gain |
SLC51A
TM4SF19-TCTEX1D2
UBXN7
TM4SF19
TM4SF19-AS1
LINC00885
TCTEX1D2
PCYT1A
ZDHHC19
|
| nsv593071 | Chr.3:196132016 - 196345571 on Build GRCh38 | Gain |
SLC51A
TM4SF19-TCTEX1D2
TM4SF19
TM4SF19-AS1
LINC00885
TCTEX1D2
PCYT1A
ZDHHC19
|
| nsv4183 | Chr.3:196307196 - 196352238 on Build GRCh38 | Deletion |
TM4SF19-TCTEX1D2
UBXN7
TM4SF19
TM4SF19-AS1
TCTEX1D2
|
| esv2759213 | Chr.3:195382058 - 196344722 on Build GRCh38 | Gain+Loss |
MUC20
TFRC
SDHAP2
MUC4
ACAP2
TM4SF19
APOD
TM4SF19-AS1
TNK2
MIR570
LOC101929697
ZDHHC19
PPP1R2
SLC51A
TM4SF19-TCTEX1D2
LINC00969
LOC105374301
LOC105374297
LINC00885
SDHAP1
TCTEX1D2
PCYT1A
LOC105374299
MIR6829
|
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Additional Information:
For this assay, SNP(s) [rs139537865] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
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