Hs03480694_cn

• Gene Symbol: LOC105377135
• Assay Reference Genome Location: Chr.3:52999082 on build GRCh38
• Cytoband: 3p21.1

Target Gene Details

• Entrez Gene ID: 105377135
• Gene Name: transcription initiation factor TFIID subunit 4-like
• Gene Aliases: -
• Location: Chr.3:52999045-53048252 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105377135	XM_011534353.2			XP_011532655.1

Target Gene Details

• Entrez Gene ID: 51460
• Gene Name: Scm-like with four mbt domains 1
• Gene Aliases: RU1, SFMBT, hSFMBT
• Location: Chr.3:52899209-53046655 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SFMBT1	NM_016329.3			NP_057413.2
	XM_005265221.3			XP_005265278.1
	XM_006713203.3			XP_006713266.1
	XM_006713204.3			XP_006713267.1
	XM_011533824.2			XP_011532126.1
	XM_011533825.2			XP_011532127.1
	AF168132.1			AAF19794.1
	AK313965.1
	BC014614.2			AAH14614.1
	BG717319.1
	BG723139.1
	BU553665.1
	CR981845.1
	DB064119.1
	DB070525.1
	DB081417.1
	DB085221.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv4741n100	Chr.3:52987994 - 53003226 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv4740n100	Chr.3:52985167 - 53005649 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv1375e212	Chr.3:52997707 - 53005188 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv21e209	Chr.3:52991984 - 53004882 on Build GRCh38	Deletion	SFMBT1 LOC105377135
nsv514151	Chr.3:52993452 - 53004900 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv8332n54	Chr.3:52996726 - 53004967 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv29989	Chr.3:52992698 - 53004770 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv999683	Chr.3:52992721 - 53005771 on Build GRCh38	Deletion	SFMBT1 LOC105377135
nsv3823	Chr.3:52969643 - 53017047 on Build GRCh38	Deletion	SFMBT1 LOC105377135
esv3568750	Chr.3:52989182 - 53004915 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv8330n54	Chr.3:52993967 - 53012200 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv4739n100	Chr.3:52975363 - 53005649 on Build GRCh38	Loss	SFMBT1 LOC105377135
nsv442860	Chr.3:52994360 - 53007503 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv107e180	Chr.3:52993109 - 53007503 on Build GRCh38	Loss	SFMBT1 LOC105377135
nsv1000857	Chr.3:52997708 - 53011897 on Build GRCh38	Gain	SFMBT1 LOC105377135
dgv8333n54	Chr.3:52998619 - 53004967 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv862e199	Chr.3:52993132 - 53005076 on Build GRCh38	Deletion	SFMBT1 LOC105377135
esv3561890	Chr.3:52991985 - 53006515 on Build GRCh38	Deletion	SFMBT1 LOC105377135
esv2759149	Chr.3:52972039 - 53005439 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv26966	Chr.3:52993051 - 53005070 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv3596164	Chr.3:52993090 - 53004904 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv2763768	Chr.3:52989195 - 53011909 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv2760749	Chr.3:52994359 - 53005263 on Build GRCh38	Loss	SFMBT1 LOC105377135
esv2725281	Chr.3:52993092 - 53004871 on Build GRCh38	Deletion	SFMBT1 LOC105377135
nsv999427	Chr.3:52988839 - 53007857 on Build GRCh38	Gain	SFMBT1 LOC105377135
esv3568751	Chr.3:52994074 - 53005088 on Build GRCh38	Loss	SFMBT1 LOC105377135
dgv8327n54	Chr.3:52990200 - 53004967 on Build GRCh38	Loss	SFMBT1 LOC105377135

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
spermatogenesis
covalent chromatin modification
cell differentiation
negative regulation of transcription, DNA-templated
negative regulation of muscle organ development

Function(s)

transcription corepressor activity
protein binding
histone binding