Hs03491277_cn

• Gene Symbol: CNTN4
• Assay Reference Genome Location: Chr.3:3058080 on build GRCh38
• Cytoband: 3p26.2

Target Gene Details

• Entrez Gene ID: 152330
• Gene Name: contactin 4
• Gene Aliases: AXCAM, BIG-2
• Location: Chr.3:2098771-3059080 on Build GRCh38
• Assay Gene Location: Within Exon 33

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNTN4	XM_006713004.3	24	5290	XP_006713067.1
	XM_011533425.2	24	5293	XP_011531727.1
	XM_011533426.2	25	5512	XP_011531728.1
	XM_011533427.2	25	5493	XP_011531729.1
	XM_011533428.2	23	5482	XP_011531730.1
	XM_011533429.2	23	5417	XP_011531731.1
	XM_011533430.2	23	5378	XP_011531732.1
	XM_011533431.2	22	8127	XP_011531733.1
	XM_017005782.1	25	5235	XP_016861271.1
	XM_017005783.1	26	6109	XP_016861272.1
	XM_017005784.1	24	5570	XP_016861273.1
	XM_017005785.1	25	5217	XP_016861274.1
	XM_017005786.1	23	5479	XP_016861275.1
	XM_017005787.1	23	5375	XP_016861276.1

Target Gene Details

• Entrez Gene ID: 100873975
• Gene Name: CNTN4 antisense RNA 1
• Gene Aliases: -
• Location: Chr.3:3039661-3061145 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CNTN4-AS1	NR_046554.1
	BM920658.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv589371	Chr.3:2170634 - 3594980 on Build GRCh38	Loss	CNTN4-AS1 LOC100130207 CNTN4 TRNT1 CRBN IL5RA
esv2751994	Chr.3:2200757 - 3178886 on Build GRCh38	Gain	CNTN4-AS1 CNTN4 TRNT1 CRBN IL5RA
esv2422274	Chr.3:2100396 - 3314907 on Build GRCh38	Duplication	CNTN4-AS1 LOC100130207 CNTN4 TRNT1 CRBN IL5RA CNTN4-AS2
nsv521796	Chr.3:3038825 - 3151219 on Build GRCh38	Loss	CNTN4-AS1 CNTN4 TRNT1 CRBN IL5RA
dgv4636n100	Chr.3:2825734 - 3271845 on Build GRCh38	Gain	CNTN4-AS1 LOC100130207 CNTN4 TRNT1 CRBN IL5RA

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

neuron cell-cell adhesion
nervous system development
axonogenesis
axon guidance
axonal fasciculation
brain development
neuron projection development
negative regulation of neuron differentiation
regulation of synaptic plasticity