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See other SLC51A CNV Assays ›
Gene Symbol
SLC51A
Assay Reference Genome
Location

Chr.3:196225460 on build GRCh38
Cytoband
3q29
Assay ID Hs03498201_cn
Size
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 200931

Gene Name:

 solute carrier family 51 alpha subunit

Gene Aliases:

 OSTA, OSTalpha

Location:

 Chr.3:196216512-196233430 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC51A NM_152672.5 NP_689885.4
AK172837.1 BAD18802.1
AK300996.1
AY194243.1 AAP23993.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv521280 Chr.3:196222670 - 196228601 on Build GRCh38 Loss SLC51A
nsv997797 Chr.3:195931489 - 196486087 on Build GRCh38 Gain RNF168 TM4SF19-AS1 UBXN7-AS1 TM4SF19-TCTEX1D2 LINC00885 ZDHHC19 SDHAP1 UBXN7 LOC105374301 TCTEX1D2 PCYT1A TM4SF19 TFRC SLC51A
esv3569221 Chr.3:196209781 - 196229993 on Build GRCh38 Loss ZDHHC19 SLC51A
nsv1009811 Chr.3:196124925 - 196411200 on Build GRCh38 Gain TCTEX1D2 PCYT1A TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2 LINC00885 ZDHHC19 UBXN7 SLC51A
nsv593071 Chr.3:196132016 - 196345571 on Build GRCh38 Gain TCTEX1D2 PCYT1A TM4SF19 TM4SF19-AS1 TM4SF19-TCTEX1D2 LINC00885 ZDHHC19 SLC51A
nsv1008512 Chr.3:195982791 - 196248065 on Build GRCh38 Gain PCYT1A LINC00885 TFRC ZDHHC19 SDHAP1 LOC105374301 SLC51A
esv2759213 Chr.3:195382058 - 196344722 on Build GRCh38 Gain+Loss TNK2 APOD TM4SF19-AS1 TM4SF19-TCTEX1D2 PPP1R2 LOC105374299 MIR570 LINC00885 ZDHHC19 SDHAP1 LOC105374301 LINC00969 TCTEX1D2 MIR6829 PCYT1A ACAP2 LOC105374297 TM4SF19 LOC101929697 MUC20 SDHAP2 MUC4 TFRC SLC51A

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More Information


Additional Information:

For this assay, SNP(s) [rs74350809] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transporter

Gene Ontology Categories:

Function(s) Process(es)


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